BAC Information

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BAC

Clone NameMSMg01-343P02
Chromosome8 (Build37)
Map Location 65,454,083 - 65,454,210
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343P02.T7 (MSMg01no343_p02.b1)MSMg01-343P02.TJ (MSMg01no343_p02.g1)
ACCAG457126AG457127
length896808
length of high quality
(start - end)
128 (70 - 197)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no343_p02.b1 PHD_FILE: MSMg01no343_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:58 2005CHROMAT_FILE: MSMg01no343_p02.g1 PHD_FILE: MSMg01no343_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
ATTAGTACCTATAGTTTGTTGGGGTTTTTTTATATATAGTTTTTACAAGA
AGAAATGCATACATTGAAAGTGCTTTTCTTCTGCATCATCTGCTTGTAAA
CACTCTGAGGGGTTAGTATTACAGTTTCAGTAGAATCAGTGCTAGCAGAT
AACGAATTGGCAGCCAGAGGGTTTTTTGTCGCTGTTGCTCTTCTTTTTGT
TCTTATGTTCTTCTCCCATTCATTTTTTTTTCTTTTTTTTTCTTTCCCTC
TTCCTCACCCTTTTTTTTTTTTTCTGTTGCTCCTCTCGCTCCTATTTCAC
CAACTATCCTTTTTTCTCTTCCTTCTTTTTCCCCTATTTTCTCATATTCT
CTTTTTCTGGATATATTAGGGCCCCAAACATTTCCTCCANATCTAAAGTA
ATGATCGTCTAACTAAGCAGACAATTCTTTTCTATTTTATATTTTCTCCC
CCCTTCTTTTTTTTCTTTTCTTTCCTCCTTTCTCCCTCCATATATTCCTC
TTCTCTCCCGTTCCCCTCTCTTTCCCCTTTTATTCTCTCTCTTCTTTTCA
ATTCACTTCGCCTCATCATTGTCTCACATCTGTATTGTTCACACCTCCTT
TAATTTTCTTACTATCCTTCCTAATTTTCTCGTACAACTTCTTTACTTTT
TCATGTTCTGTGTTACTATTTTCATCTCCCTACTTCTTCTTCTCTCTTCT
CCTCTCATTTACCATTATCCCTCTCCTATTATTAAAATTCACCTTCGCTC
TCGCCCCTACTATTTCATTCTACTCTTTTATCTCCTTCCGCCACCTTATT
TTTCCTTTCCCTACGCCTATCGTCTTATTTCTCTTTACTTTTCTTG
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAAGGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTC
ATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
GAGGATTTTTGCTTCTATATTCATAATAGTAATTGGTCTGAAGATCTCTA
TCTTTGTTGCATCTTTCTGTGTTTTACGCATCTTATTATTAGTGCGCTCT
TTATTTGTTTCCCCCCCCCATTACTTTCCATCTTTTTTCGTTTTGTAAAT
TTTTTGCTCTTCAATTTTACTCTTCATCTCTCTACACAAGCTTCCGATTT
TATTTTTTCTTTTTTTCTCCCCTCTCCTTTATATTTTTTTTTTTTTTTTT
CTTCCCCCCTCTTTTTTTTTTTTCTTCCTCTTCTTTTTTTTTATCTCTTC
TTCCCTTTTCTTTTTCTTTCCCTCTTTCTTACTTTCCTTTTTTTTTTTTT
TTATTTCTTTCTTTTTCTACCCTTAACTTTCTTCATCTATTTTTACCCTT
CTTCCCTTTTTTTTCTTTCTCCCCTCCCTTTTCCTTCTTTTCTCTAGACC
TCTTTTTTTGTTTCCATTTTTATTTTCATCACTCTCTTTTATACTTAACT
TTTCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_p02.b1 MSMg01no343_p02.b1 CHROMAT_FILE:
MSMg01no343_p02.b1 PHD_FILE: MSMg01no343_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:58 2005
         (128 letters)



>mm_chr8_65453883_65454410
          Length = 528

 Score =  240 bits (124), Expect = 3e-68
 Identities = 127/128 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggtttttttatatatagtttttacaagaagaaatgcatacattgaaagtgcttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggtttttttatatatagtttttacaagaagaaatgcatacattgaaagtgcttttct 260

                                                                       
Query: 61  tctgcatcatctgcttgtaaacactctgaggggttagtattacagtttcagtagaatcag 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tctgcatcatctgcttgtaaacactctgaggggttagtattactgtttcagtagaatcag 320

                   
Query: 121 tgctagca 128
           ||||||||
Sbjct: 321 tgctagca 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)