BAC Information

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BAC

Clone NameMSMg01-345A10
Chromosome8 (Build37)
Map Location 115,195,592 - 115,359,655
singlet/doubletdoublet
Overlap geneCntnap4
Upstream geneCtrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345A10.T7 (MSMg01no345_a10.b1)MSMg01-345A10.TJ (MSMg01no345_a10.g1)
ACCAG457947AG457948
length735744
length of high quality
(start - end)		522 (57 - 578)494 (90 - 583)
definitionCHROMAT_FILE: MSMg01no345_a10.b1 PHD_FILE: MSMg01no345_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:23 2005CHROMAT_FILE: MSMg01no345_a10.g1 PHD_FILE: MSMg01no345_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,359,345 - 115,359,655)(115,195,592 - 115,196,085)
sequence
NNNGGGGGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGG
TTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGA
TATTATCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTGGTCTCTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTT
GGAGTTTCATTAGGTCACCCACACTTTTCTACCTTTTGCACTAGTGCTAT
AAAATTCTCGGTCTTCCTCCCTTCTTCCTCCTCACCAACTCTACTTATTA
CTTCTGGAATATCCCCATGACTCTGCCCATATACATCTTCACCCACAATA
ACTCCAGTTGATCTATTGTGTGGCTGTAAGCATATTTATTATATATGAAC
ATATGTTTGAACCCTGGAACTTTTAACGTGACAACATCACATCTCTATTT
CAATGACTGATGACATCTCGGCTTTTTGATGTCTAACAATGAAGCTTCTT
GCAATAATTCCAACATCTTGACCTTGNAAGTAGTGTTTTCCATTTNCAAT
CATGTCAGCTCTATGCTTCTAACTATCATATCAAACACATCTCTGGCCTA
TTCTTCATGTTTTCTCTTGAAAATGACATCAATTCGTCAGCAACTTCTTT
ACCCTCCCTTTAACAATGGCCCACATCCCATCTCT

AAAAAAAAANNNCCGATGGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCCCTTTG
CAGTGATTAACCTAGCACTTTGTGGTGAAAAGGTGGCTGGGCTTTCTTTT
TAAATTGCGGTTAGGACAATTAATGTGAAATTTATTCTCTTAACAAAGTT
TTAAGTGTGCGGTGAAGTATTGCTCATTATAAGCACTGTGCTGAGCAGCT
GCTCTTTGGGGTTAATCAGTTTTGTAACTCTAGCATTATCCCTGTGGAGC
AGTGCCTAGTCTTCACCGGTCTCTCACTTCCTAGGGACCATTTCAGGCTG
TTCCGATAAGGGCAATCATATGGTATTTGTCCCAGGGATAGCTTAGTTTA
GTCATTCTACTTCTTCATAGCTTCGTCTATTTTAGGATAAAACTCTTTTC
TTGTAGTTCTTTAAATATGAATTTTTTATTGTTCTTATGAATTTCATATA
TGGATGCAATGAAACATGACACCACCCCCATTTTCCTGTCCCCAGCTCCT
TCCAAATCACCACAATCCCTCCCCAGCTTCATGGACTCTTTTTTTGGATA
ACTCTGTCCAATTAATATATCTCAGATGGGTGAGGGGGCGGCATTCCCCT
GGGGCATGTGAAATCTCCCCGTGGGGTGCAATTTCTAAAAAATGGAGTTT
TCCCCCCAGAACCTGTTAACCTTTCAAAAAAAAAACCCCCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_a10.b1 MSMg01no345_a10.b1 CHROMAT_FILE:
MSMg01no345_a10.b1 PHD_FILE: MSMg01no345_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:23 2005
         (522 letters)



>mm_chr8_115358912_115359833
          Length = 922

 Score =  586 bits (303), Expect = e-171
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 210 cacccacacttttctaccttttgcactagtgctataaaattctcggtcttcctcccttct 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cacccacacttttctaccttttgcactagtgctataaaattctcggtcttcctcccttct 685

                                                                       
Query: 270 tcctcctcaccaactctacttattacttctggaatatccccatgactctgcccatataca 329
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcctcctcaccaactccacttattacttctggaatatccccatgactctgcccatataca 625

                                                                       
Query: 330 tcttcacccacaataactccagttgatctattgtgtggctgtaagcatatttattatata 389
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttcacccacaataactctagttgatctattgtgtggctgtaagcatatttattatata 565

                                                                       
Query: 390 tgaacatatgtttgaaccctggaacttttaacgtgacaacatcacatctctatttcaatg 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaacatatgtttgaaccctggaacttttaacgtgacaacatcacatctctatttcaatg 505

                                                                       
Query: 450 actgatgacatctcggctttttgatgtctaacaatgaagcttcttgcaataattccaaca 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actgatgacatctcggctttttgatgtctaacaatgaagcttcttgcaataattccaaca 445

                      
Query: 510 tcttgaccttg 520
           |||||||||||
Sbjct: 444 tcttgaccttg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_a10.g1 MSMg01no345_a10.g1 CHROMAT_FILE:
MSMg01no345_a10.g1 PHD_FILE: MSMg01no345_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:24 2005
         (494 letters)



>mm_chr8_115195392_115196285
          Length = 894

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgccctttgcagtgattaacctagcactttgtggtgaaaaggtggctgggctttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgccctttgcagtgattaacctagcactttgtggtgaaaaggtggctgggctttcttt 260

                                                                       
Query: 61  ttaaattgcggttaggacaattaatgtgaaatttattctcttaacaaagttttaagtgtg 120
           | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 taaaattgcggttaggacaattaatgtgaaatttatcctcttaacaaagttttaagtgtg 320

                                                                       
Query: 121 cggtgaagtattgctcattataagcactgtgctgagcagctgctctttggggttaatcag 180
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cagtgaagtattgctcattataagcactgtactgagcagctgctctttggggttaatcag 380

                                                                       
Query: 181 ttttgtaactctagcattatccctgtggagcagtgcctagtcttcaccggtctctcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgtaactctagcattatccctgtggagcagtgcctagtcttcaccggtctctcactt 440

                                                                       
Query: 241 cctagggaccatttcaggctgttccgataagggcaatcatatggtatttgtcccagggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagggaccatttcaggctgttccgataagggcaatcatatggtatttgtcccagggat 500

                                                                       
Query: 301 agcttagtttagtcattctacttcttcatagcttcgtctattttaggataaaactctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcttagtttagtcattctacttcttcatagcttcgtctattttaggataaaactctttt 560

                                                                       
Query: 361 cttgtagttctttaaatatgaattttttattgttcttatgaatttcatatatggatgcaa 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtagttctttaaatatgaatttttcattgttcttatgaatttcatatatggatgcaa 620

                                                                       
Query: 421 tgaaacatgacaccacccccattttcctgtccccagctccttccaaatcaccacaatccc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tgaaacatgacaccacccccattttcctgtccccagctccttccaaatcaccacaatctc 680

                         
Query: 481 tccccagcttcatg 494
           ||||||||||||||
Sbjct: 681 tccccagcttcatg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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