Query= MSMg01no345_b14.b1 MSMg01no345_b14.b1 CHROMAT_FILE:
MSMg01no345_b14.b1 PHD_FILE: MSMg01no345_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:29 2005
(573 letters)
>mm_chr8_127490037_127491009
Length = 973
Score = 998 bits (516), Expect = 0.0
Identities = 553/566 (97%), Gaps = 5/566 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttcagaggtttttaaccccccaggcctcaaggagagatgagaaagggtcttct 63
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattcttcagaggtttttaaccccccaggcctcaaggagagatgagaaacggtcttct 263
Query: 64 gggggtggtttgaataggtttggcctagggagtggcactatttgatggtgtggtcttgtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggggtggtttgaataggtttggcctagggagtggcactatttgatggtgtggtcttgtt 323
Query: 124 ggagtacgtgtgtcactgtgggtgtgggctttaatacccctgacctaaatgcctggaaac 183
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaataggtgtgtcactgtgggtgtgggctttaatacccctgacctaaatgcctggaaac 383
Query: 184 caatcttctccagtttactttggaataagatgtagacctctcagctcctcctgcaccacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caatcttctccagtttactttggaataagatgtagacctctcagctcctcctgcaccacc 443
Query: 244 cttgcctggatactgccatgctcctgccttgatgataatagactgaacgtgtaagccagc 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 cttgcctggatactgccatgctcctgccttgatgataatagactgaacctgtaagccagc 503
Query: 304 tccaattaaatgttgtcctttataagacttgacttggccaaggtgtctgttcacagcagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccaattaaatgttgtcctttataagacttgacttggccaaggtgtctgttcacagcagt 563
Query: 364 aaaagcctaaccaagacactctttgtgtgtgtatctgctgagtgtgtttcctcagggccg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaagcctaaccaagacactctttgtgtgtgtatctgctgagtgtgtttcctcagggcca 623
Query: 424 agagatacacgcttccctccctttcacaaactcatggttgataggtgcttgaaatttctc 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagatacacgcctccctccctttcacaaactcatggttgataggtgcttgaaatttctc 683
Query: 484 caaggctacaagttgcgcctcagcttttccctgccttttctttcttccttcttctttttc 543
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct: 684 caaggctacaagttgcgcctcagctttcccctgccttttctttcttcctt-ttctttt-c 741
Query: 544 ttctcttttcttttcttttcttttct 569
|| ||||||||||| |||| |||||
Sbjct: 742 ttttcttttctttt-tttt--tttct 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_b14.g1 MSMg01no345_b14.g1 CHROMAT_FILE:
MSMg01no345_b14.g1 PHD_FILE: MSMg01no345_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:29 2005
(460 letters)
>mm_chr8_127683159_127684018
Length = 860
Score = 754 bits (390), Expect = 0.0
Identities = 414/422 (98%)
Strand = Plus / Minus
Query: 39 tgttatcccagcactgcggagatagagtcaggagaatccctgagcctggctcgtcaggct 98
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 860 tgttatcccagcactgcagagatagagtcaggagaatccctgagcctggctggtcaggct 801
Query: 99 tgcccagctgtggggcaataggacctactgaaagagcttgcctcaaaagtaaataaatag 158
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 800 tgcccagctgtggggcaataggacctactgaaagagcttgcctccaaagtaaataaatag 741
Query: 159 ataataataataacaataataatacagaaggcttctgagcaacatctgagattgatctcc 218
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 740 ataataataataacaacaataatatggaaggcttctgagcaacatctgagattgatctcc 681
Query: 219 agcgcccacatgcacacacaggaacatgtgcacacacaccaacacacaccacaaacacac 278
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 agcgcccacatgcacacacaggaacatgtgcatacacaccaacacacaccacaaacacac 621
Query: 279 aaacaaacgaacttgaagcatggcaccagcctagtagaaaaccctacagaagtcatcgac 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaacaaacgaacttgaagcatggcaccagcctagtagaaaaccctacagaagtcatcgac 561
Query: 339 tgaaggaaaacgttgcagcccacagctcccccgactcggaggatggaagctgagtggaaa 398
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 tgaaggaaaacgttgcagcccacagctcccccgacttggaggatggaagctgagtggaaa 501
Query: 399 catccaccccacctcggagcttgacatccacagatgcctcggaagcctttgaagatgaag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catccaccccacctcggagcttgacatccacagatgcctcggaagcctttgaagatgaag 441
Query: 459 at 460
||
Sbjct: 440 at 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
