BAC Information

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BAC

Clone NameMSMg01-345E14
Chromosome8 (Build37)
Map Location 39,621,391 - 39,621,652
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345E14.T7 (MSMg01no345_e14.b1)MSMg01-345E14.TJ (MSMg01no345_e14.g1)
ACCAG458145AG458146
length730762
length of high quality
(start - end)		267 (55 - 321)491 (86 - 576)
definitionCHROMAT_FILE: MSMg01no345_e14.b1 PHD_FILE: MSMg01no345_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:42 2005CHROMAT_FILE: MSMg01no345_e14.g1 PHD_FILE: MSMg01no345_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTACCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCAAAGGAGTCTCACTGAGTATGTTAACTACACTT
TAGTGTAGGCTGCACGTCCAGTATAAGTTTTGTGGTCATTATTCTCATGG
AGACTGACACAAAATGAAATTACTAATATTTTTCCAATTTTTCTTTTTTA
TAATTCTTTGTTAGGACAGCTTTTTTTGGTCTTTTGTTTATGTATTTTAT
TTTCAGTTTTGGATTCTCAGTGTATATTCTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTNTNTNNNNTTTTTTTTTTTTTTNTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTNNTTNT
TTTTTTTTTTTTTTTTTTTTTCCTNNNNNNNTTTNTTTTCCCCTNTTTTT
NTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTNTTTTNTTTTTTTTTTTTTTTCTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNT
TTTTTTTTTTTTTTTNTTTTNNTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNTTNNTNTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NNNNNCCTTCGAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCAAAGGAA
AAAGAGTGAGCAGCGGTAACAGACAGGGTACAAGACAGGAAATATATTTA
CTACCTATATATCTGACAGAGTATTATTATTTAGGATACATTAAATATTC
AAAAGTCTTAATAACAAATATTCAAGCAATTAAGCCAAATCAGTAAATGT
GTTAATGAAATGAACATGTAGTTTCCCCAAACTGAAGCATAAATATGGCC
AGAAAATATACAATTTTTCCACTATTCTTATTCGTCATGGAAATACAAAT
TCTAGGTGCAATTAGATTCCCAGTAAGAAATAGTGTCATTAAAATTCAAC
TACAAAAACAAACAATAAATGTTTGCAAGAATGTAAAAAGGGTAAAATTT
GCTCACTGCTAGTCAGAATGCAAGCTGGTCACACCACTATGAAAATCAGT
ATGTAAGTTCTTCAATAAAAGCAAAGTAGACTTACAGTAATATCAAGCTA
TGCTACTTCTGCACACATACCAATGGGACACTGAGTCAACACACAACAGA
GAGAAGTGATCAGGCCTTCATATTATCACACTATTTACAGTAGCCAAAGT
ACTGGAACCGTCCTTGGGTTCCACTCCCAGATAGCTAGACAAAAAAAGGA
GGGTTATACTTGGAGGTTTTCTCCTCCCTAATTAAGGTGGACAAAATTTC
CCCCTTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_e14.b1 MSMg01no345_e14.b1 CHROMAT_FILE:
MSMg01no345_e14.b1 PHD_FILE: MSMg01no345_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:42 2005
         (267 letters)



>mm_chr8_39621163_39621829
          Length = 667

 Score =  507 bits (262), Expect = e-148
 Identities = 262/262 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccaaaggagtctcactgagtatgttaactacactttagtgtaggctgcacgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattctccaaaggagtctcactgagtatgttaactacactttagtgtaggctgcacgtc 431

                                                                       
Query: 65  cagtataagttttgtggtcattattctcatggagactgacacaaaatgaaattactaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cagtataagttttgtggtcattattctcatggagactgacacaaaatgaaattactaata 371

                                                                       
Query: 125 tttttccaatttttcttttttataattctttgttaggacagctttttttggtcttttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttttccaatttttcttttttataattctttgttaggacagctttttttggtcttttgtt 311

                                                                       
Query: 185 tatgtattttattttcagttttggattctcagtgtatattctgtgtgtgtgtgtgtgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tatgtattttattttcagttttggattctcagtgtatattctgtgtgtgtgtgtgtgtgt 251

                                 
Query: 245 gtgtgtgtgtgtgtgtgtgtgt 266
           ||||||||||||||||||||||
Sbjct: 250 gtgtgtgtgtgtgtgtgtgtgt 229


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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