BAC Information

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BAC

Clone NameMSMg01-346D03
Chromosome8 (Build37)
Map Location 12,402,574 - 12,403,159
singlet/doubletsinglet
Overlap geneEG434280
Upstream geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434279, Sox1
Downstream gene1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346D03.T7 (MSMg01no346_d03.b1)MSMg01-346D03.TJ (MSMg01no346_d03.g1)
ACCAG458839AG458840
length718723
length of high quality
(start - end)
459 (42 - 500)586 (69 - 654)
definitionCHROMAT_FILE: MSMg01no346_d03.b1 PHD_FILE: MSMg01no346_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:49 2005CHROMAT_FILE: MSMg01no346_d03.g1 PHD_FILE: MSMg01no346_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACAAATTCCAACACACCCCTAAAAAGGCCAATAATCAAATCCACAGCCA
TGTGTGAACCTTCTGCTCCCCACCCCAGTGTCTTAGTAACAACTGCTGTG
ACGAAACACCAAGGCTGCAAGCAACTTGGAGAGAGAAGAGTTTATTCAGC
TCACACTCCCACATCATAGTTCATCATCAAAGGAAGGCAGGACAAGAACT
CTTAACAGAGCAGGAACCTGGAGGCAGGAGGAGCTGATGCAGAGGCCATG
CGAGGGTGCTGCTTACTGGCTTGCTCACCATGGCTTGTTCAGCCTTCTTT
CTTCTAGAACCCAGGACCACCAGCCTAGGGATGGCACCAGCCATCATGGG
CAGGGCCCTTCCCTATCATTCAGTAATTAATAAGATGCCCTACCGGCTTG
CTTACAGCCTGATCTTACAGAGGCATTTTCTCAGTTGAGGTTCCCTCCTC
TCAGATGTATAACGAGCCACCATGGGCAGCAAGGGCAGAGATGACCCGAG
GGATGTAACTGGATGATCTGAGTTGATTGATGATATAACCGCATTCCAAC
CATTACGACGCGCGTTCTTTCCAAATGAAAGTGGAATATTTTCTCAGAAC
GGACGTAATCTTTGCTCTGGAAAAATGTTCACCGGGTCCTTTTATATTGT
GAAGCGTTTCACAGCCCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTACTGAGATGATATCGGTTAACTGATAATGT
TTGACAAATGTGGAAAATATAAAAGCCCAAGGAAGTAATATACACGCACA
GACAAAGAGCCTATGTTTGGGTAGGACAAATAAAAAACACAAAATTGCCA
AATCTTCTAAATTCTCACCTGCACATGAACAGACTCCACCAGCAGGGACA
GGACAGAGCCAGTTTTCAGCGTTTCTTTGTTTTTGTTTTAAATAACAAAC
TCGCACATCCCTGCACAGTGGGCGCACCCTGTGGACTCACACACTTAGGT
AGAAAGTAGGCTGTGAGTTCGAAGTTCAAAGTGGAAGAGCAGAATGCTGC
AGAAGCAGATGCTAAGTGACCTTCTGGCGAAATTTGTCTGTGTCAGAGAC
GGTGGCCTTAGAGTCTTCCTGAATGCCCTGCGGGCATCTCGTGAGGATTT
AATTGCCCTCGGCCACTTCAGAACAGCCTTGTGGGTACATTAAAGACTCT
GTTTGTGGAGAACAGCAGGTCACCACACGCAAAGCCTTGGAATAGTCAGC
CAGTCAAATCAGTGGAAAAAATCAGCTTTTGTTAGATTTTGCAGTTTCGG
GAATTAGGCATTCACTGCAGAGCTGCAGTTGTGAGAAATTGCAATGTCAG
GCGCGTTCTCAGTGGGGAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_d03.g1 MSMg01no346_d03.g1 CHROMAT_FILE:
MSMg01no346_d03.g1 PHD_FILE: MSMg01no346_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:49 2005
         (586 letters)



>mm_chr8_12402374_12403359
          Length = 986

 Score = 1091 bits (564), Expect = 0.0
 Identities = 581/588 (98%), Gaps = 4/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactgagatgatatcggttaactgataatgtttgacaaatgtggaaaatataaaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgagatgatatcggttaactgataatgtttgacaaatgtggaaaatataaaagccc 260

                                                                       
Query: 61  aaggaagtaatatacacgcacagacaaagagcctatgtttgggtaggacaaataaaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaagtaatatacacgcacagacaaagagcctatgtttgggtaggacaaataaaaaac 320

                                                                       
Query: 121 acaaaattgccaaatcttctaaattctcacctgcacatgaacagactccaccagcaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaattgccaaatcttctaaattctcacctgcacatgaacagactccaccagcaggga 380

                                                                       
Query: 181 caggacagagccagttttcagcgtttctttgtttttgttttaaataacaaactcgcacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggacagagccagttttcagcgtttctttgtttttgttttaaataacaaactcgcacat 440

                                                                       
Query: 241 ccctgcacagtgggcgcaccctgtggactcacacacttaggtagaaagtaggctgtgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgcacagtgggcgcaccctgtggactcacacacttaggtagaaagtaggctgtgagt 500

                                                                       
Query: 301 tcgaagttcaaagtggaagagcagaatgctgcagaagcagatgctaagtgaccttctggc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 501 tcgaagttcaaagtggaagagcagaatgctgcagaagcaaatgctaagtgaccttctggg 560

                                                                       
Query: 361 gaaatttgtctgtgtcagagacggtggccttagagtcttcctgaatgccctgcgggcat- 419
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || 
Sbjct: 561 gaaatttgcctgtgtcagagacggtggccttagagtcttcctgaatgccctgcgg--att 618

                                                                       
Query: 420 -ctcgtgaggatttaattgccctcggccacttcagaacagccttgtgggtacattaaaga 478
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tctcgtgaggatttaattgccctcggccacttcagaacagccttgtgggtacattaaaga 678

                                                                       
Query: 479 ctctgtttgtggagaacagcaggtcaccacacgcaaagccttggaatagtcagccagtca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctctgtttgtggagaacagcaggtcaccacacgcaaagccttggaatagtcagccagtca 738

                                                           
Query: 539 aatcagtggaaaaaatcagcttttgttagattttgcagtttcgggaat 586
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatcagtggaaaaaatcagcttttgttagattttgcagtttcgggaat 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)