BAC Information

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BAC

Clone NameMSMg01-346F06
Chromosome8 (Build37)
Map Location 34,929,521 - 34,929,949
singlet/doubletsinglet
Overlap geneRbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346F06.T7 (MSMg01no346_f06.b1)MSMg01-346F06.TJ (MSMg01no346_f06.g1)
ACCAG458941AG458942
length738751
length of high quality
(start - end)
458 (63 - 520)415 (68 - 482)
definitionCHROMAT_FILE: MSMg01no346_f06.b1 PHD_FILE: MSMg01no346_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:00 2005CHROMAT_FILE: MSMg01no346_f06.g1 PHD_FILE: MSMg01no346_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
ACCTCTCTAGACTATACATCTATGTGTTGAATTGTTTAAAATGTTCTGTT
TTAGATTAATAGTGGCCATGATAATAGGCATGATTTGTGTGTGCACATGT
ATACGTACATACACATATATGTGCATGCCATGGCATGAGTATGGGGATCA
GAAGACAACTTGAGGAGAATTTGTTCTGCCATGCAGGGTCCAGGGGTTGA
TCTTTGGACATCAAGCTGCCTTATTAGCTGAGCCACCTCACAGTCTGAAA
ACCCTGAAGATAGCAGCGTCGCCCCTAAATGGTATCTTCACAGCGTGTAC
ACTCTGATCGGCCCCACCAGTGAGCCTCATACCGGGGCTCGCTCTCTGCC
AGACTAGCAGGAGTATTCAAAGGTCAAAGAGAGTCTGCCATGTTCTCTTG
CTTCTGAACTTTTCCTCAGACTCATCACTGTCTGGCCATGATCTAGTTCC
TTTATGACTAGCGGCTTGTCCTTCAGACGTCCCCTTACCCACCACTCCCT
CTGTAGACCCTGTGGGACTCTCCACATGTGGGTTAACTGCCCTGCGACAT
GACATGGGCTTGCTGTTACAGAAATGTTTCTTTTGCTGCGCCCGCCATAT
TTATTCCTTGGAACCACGGGGGTGGTGATACAAAAAGGCCTCTGGAATTC
AAGTTATTCCAAATTTACCCCTTTCCTTTTCCTTTTTG
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGTTCAAAACCTGCATGGGCTACCGAGAAAA
TTCAAGACTAGACCCTGTCTCAAAAGAGAAAAAGCCTATAATCACCTTGG
GAGTTAGAAGGAGTTCAGAAGTTCAGAATCGTCCTCACGCACATAGTGAA
TTCTAGGTCTTGAGCGCACATGTGCATCCGTGCACACACACACACACACA
CACACACACACACACACACACAAAATCCTCTCTCATGGAAGTCAGAAGAC
AATTTGTAGGAGTTGGTTTTCTTTTTCCACCATCTTGGGCCTAGGAATTA
AACTCAGGCTGTCAAGAATTGACAGCAGGTCCCCTCAGTCCCCTCAGCCA
TCTCACCAGCCCAGCTCTCACCAGCCCAGCTTTTACATTTTTTAATAATT
TAAGGAGCACTTCAGTGTTGGAGTACTTACTCAGAGTGTATTAAGCCCTA
GGTTCAATCTCTAGTACTGGAAAACTAAAACTAAAAAAACTGAATATAGT
AATGTATGCTCATAATTCCCGCTTTTACNAGACTAAGGAAGATTGCCATA
GGTTCAAAGCCACCTGGGTTACATGGGCTGTTTCAAGGCAGCTGAGTTAT
ATTAAGTCTTTTTTTCGAAAAAATTGCGTATGTCAGAAATAATACACCCT
AATTTATTTCCCCCCCGGGGAAAGAAAAAAGAAAGAATTTTGGAATTTTA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_f06.b1 MSMg01no346_f06.b1 CHROMAT_FILE:
MSMg01no346_f06.b1 PHD_FILE: MSMg01no346_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:00 2005
         (458 letters)



>mm_chr8_34929092_34929949
          Length = 858

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Minus

                                                                       
Query: 30  tgttctgttttagattaatagtggccatgataataggcatgatttgtgtgtgcacatgta 89
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tgttctgttttagattaatagtggccatgataataggcatgatttgtgtgtgcacatgta 799

                                                                       
Query: 90  tacgtacatacacatatatgtgcatgccatggcatgagtatggggatcagaagacaactt 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tacgtacatacacatatatgtgcatgccatggcatgagtatggggatcagaagacaactt 739

                                                                       
Query: 150 gaggagaatttgttctgccatgcagggtccaggggttgatctttggacatcaagctgcct 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaggagaatttgttctgccatgcagggtccaggggttgatctttggacatcaagctgcct 679

                                                                       
Query: 210 tattagctgagccacctcacagtctgaaaaccctgaagatagcagcgtcgcccctaaatg 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tattagctgagccacctcacagtctgaaaaccctgaagatagcagcgtcgcccctaaatg 619

                                                                       
Query: 270 gtatcttcacagcgtgtacactctgatcggccccaccagtgagcctcataccggggctcg 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtatcttcacagcgtgtacactctgatcggccccaccagtgagcctcataccggggctcg 559

                                                                       
Query: 330 ctctctgccagactagcaggagtattcaaaggtcaaagagagtctgccatgttctcttgc 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctctctgccagactagcaggagtattcaaaggtcaaagagagtctgccatgttctcttgc 499

                                                                       
Query: 390 ttctgaacttttcctcagactcatcactgtctggccatgatctagttcctttatgactag 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttctgaacttttcctcagactcatcactgtctggccatgatctagttcctttatgactag 439

                    
Query: 450 cggcttgtc 458
           |||||||||
Sbjct: 438 cggcttgtc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)