BAC Information

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BAC

Clone NameMSMg01-346H12
Chromosome8 (Build37)
Map Location 88,972,074 - 88,972,543
singlet/doubletsinglet
Overlap genenone
Upstream geneGpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346H12.T7 (MSMg01no346_h12.b1)MSMg01-346H12.TJ (MSMg01no346_h12.g1)
ACCAG459047AG459048
length746743
length of high quality
(start - end)		497 (38 - 534)508 (68 - 575)
definitionCHROMAT_FILE: MSMg01no346_h12.b1 PHD_FILE: MSMg01no346_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:10 2005CHROMAT_FILE: MSMg01no346_h12.g1 PHD_FILE: MSMg01no346_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTGTCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAC
ATTTCCCAAACAAAAACAAAAACAAAAACAAAAACAAAAAACCCAAAACC
CTCAGCTGCTTCTCCTAGCAGTTTGGGAGAGCATCCGTCTGCTGAATGGA
TTCCCTCCCACCTCCCGCCTCTCTCCTCCCAACCTTACGCTTTATGGGTG
GTTCGTGCCCAAGCACACACACAGTGCATTTATTTTGTTTTCTCTGTTCC
TTGTACAGAAATTACAAAGTGATAAATTTTCACTCTAGAAATAATTAAAC
TAGCATAGAAATCTATGTTGGAGGAGGTGAACACCTCCCTTGCCCACACC
TTTGCTGTCCTTTGCTTTCTGTTACGATAAACTCTAGGACCAAAAAATGT
TTGGGGAAGAAAAGCATTTAGCTTACCCCTCTTATGCCAAATGTAGGCTG
CATGAGAACAAAGACGTCTTGCATACTCTCATATTCCCAGGCCGGGGGTC
AGCCTGCTGTATTTATTGAGTGCCAACTGACTGGCTTGGTGCATTTGCTA
TTCACAACTTTACAAATCGTGGACATCACTGGACATACAGACCCACTTCA
TGCCATAATCCAGAAGAACTTTACCTGAGGGCCTCCTCACTTACAAGGGC
CTAATGTGCTTGCCCTTACTTCCTGGTTATTTTCTGGGTTCCCATGCCAA
ATTCTTTGTTTTTGCCCCTTTTCCCCGTTTTTCCTGTACCCCTTCN

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCTTGGGTATTTCAAGTTTTTGGGCTAATAT
CCACTTATCAGTGAGTGTGTTCTTTTGTGATTGAGTTACCTCACTCAGGG
TGATATTTTATAGTTTCATCCATTTGCCTAAGAATTTCATGGCATCATTG
TTCTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTAATGGATACATTT
TCTGTATCCATTACTATGTTGAAGGACATCTTGGTTCTTTCCAGCTTCTT
GCTATTAAAAATAAGGCTGCTATGAACATAGTGGAGTGTGTGTCCTTGTT
ATATTTTGGAGCATCTTTTGGATATTTGCCCAGGAATGGTATATCTGAGT
CCTCAGGTAGTACTCTATCCAATTTTCTGAGGAACCATGGGACTAATTTC
CAAAGTGGTTGCACCAGCTTGCAATCCCATCAACGGTGGAGGAGTGTTCC
TCTTTCTCCACATCCTCACCAGCATCTGTTGTCACCTGAGTTTTTGATCT
TAGCCATTCTGACTGGTGTGAGGTGGAATCTCACGGTTGTTTTGATTTGT
TTTTTCCCGACGACTAAGGAGTTGATGTTGCTTCTTTGCCATTTCAGACT
CCCCAGTCGTAAATTTTTCGGTAAACTTTGTCCCCACTTTTTTTCACACT
TTATTTTTTGCGCTTTTTGCCCATTTCGTTTTCCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_h12.b1 MSMg01no346_h12.b1 CHROMAT_FILE:
MSMg01no346_h12.b1 PHD_FILE: MSMg01no346_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:10 2005
         (497 letters)



>mm_chr8_88971821_88972717
          Length = 897

 Score =  847 bits (438), Expect = 0.0
 Identities = 463/472 (98%), Gaps = 2/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 26  aaaacaaaaacaaaaacaaaaacaaaaaacccaaaaccctcagctgcttctcctagcagt 85
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aaaacaaaaac--aaacaaaaacaaaaaacccaaaaccctcagctgcttctcctagcagt 666

                                                                       
Query: 86  ttgggagagcatccgtctgctgaatggattccctcccacctcccgcctctctcctcccaa 145
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttgggagagcatccatctgccgaatggattccctcccacctcccgcctctctcctcccaa 606

                                                                       
Query: 146 ccttacgctttatgggtggttcgtgcccaagcacacacacagtgcatttattttgttttc 205
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccttactctttatgggtggttcgtgcccaagcacacacacagtgcatttattttgttttc 546

                                                                       
Query: 206 tctgttccttgtacagaaattacaaagtgataaattttcactctagaaataattaaacta 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctgttccttgtacagaaattacaaagtgataaattttcactctagaaataattaaacta 486

                                                                       
Query: 266 gcatagaaatctatgttggaggaggtgaacacctcccttgcccacacctttgctgtcctt 325
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 485 gcatagaaatctatgttggaggaggtgaacgcctcccttgcccacacctttgctgtcctt 426

                                                                       
Query: 326 tgctttctgttacgataaactctaggaccaaaaaatgtttggggaagaaaagcatttagc 385
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 425 tgctttctgttacgataaactctaggaccaaaaaacgtttggggaagaaaagcatttagc 366

                                                                       
Query: 386 ttacccctcttatgccaaatgtaggctgcatgagaacaaagacgtcttgcatactctcat 445
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttacccctcttatgtcaaatgtaggctgcatgagaacaaagacgtcttgcatactctcat 306

                                                               
Query: 446 attcccaggccgggggtcagcctgctgtatttattgagtgccaactgactgg 497
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attcccaggacgggggtcagcctgctgtatttattgagtgccaactgactgg 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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