Query= MSMg01no346_l19.b1 MSMg01no346_l19.b1 CHROMAT_FILE:
MSMg01no346_l19.b1 PHD_FILE: MSMg01no346_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:30 2005
(549 letters)
>mm_chr8_63370068_63371016
Length = 949
Score = 1021 bits (528), Expect = 0.0
Identities = 542/548 (98%), Gaps = 3/548 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtccctgtagtcatgtggagttagggaaggggacaatgtgaccaaatacgttg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtccctgaagtcatgtggagttagggaaggggacaatgtgaccaaatacgttg 264
Query: 65 tatgtaaaaccactcccacagttctgcatctacccatttgggtgccttttcctttttgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtaaaaccactcccacagttctgcatctacccatttgggtgccttttcctttttgcc 324
Query: 125 taagcatttcctgccgcttctagtcactgtggctatcaccctgaagttggagttaccctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagcatttcctgccgcttctagtcactgtggctatcaccctgaagttggagttaccctt 384
Query: 185 gccttcttgtagagtttgttgtttccttaaaaagcttttatggtacatcttgtcttagtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccttcttgtagagtttgttgtttccttaaaaagcttttatggtacatcttgtcttagtc 444
Query: 245 agtattctactgctgtgaagagacaccatgaccattaaaaaaaaaaa---gtgcctagct 301
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 agtattctactgctgtgaagagacaccatgaccattaaaaaaaaaaaaaagtgcctagct 504
Query: 302 ggggcttgattacagttttagaggttcggtccactatcaccacggctggaagcatggtag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ggggcttgattacagttttagaggttcggtccactatcaccacggctggaagcgtggtag 564
Query: 362 caggcaggcaggtatgctgcaggagaagcagagagttctacatctagactggaaggcagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggcaggcaggtatgctgcaggagaagcagagagttctacatctagactggaaggcagc 624
Query: 422 aggaagggagagactctgggcgtggaatgggctttttgaaacctcaaagtcttatctatc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggaagggagagactctgggcgtggaatgggctttttgaaacctcaaagtcttatctatc 684
Query: 482 ccctagtgacatacttcctccaccaaggccacagttcctagtccttcccagtactgccat 541
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccctagtgacacacttcctccaccaaggccacagttcctagtccttcccagtactgccat 744
Query: 542 tccttggt 549
||||||||
Sbjct: 745 tccttggt 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_l19.g1 MSMg01no346_l19.g1 CHROMAT_FILE:
MSMg01no346_l19.g1 PHD_FILE: MSMg01no346_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:30 2005
(489 letters)
>mm_chr8_63578311_63579202
Length = 892
Score = 911 bits (471), Expect = 0.0
Identities = 486/493 (98%), Gaps = 5/493 (1%)
Strand = Plus / Minus
Query: 1 cagggccaagaagtgggagtgggtgggcaggggagtggcaggggagggtctgggggcctt 60
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 815 caggtccaagaagtgggagtgggtgggcaggggagtggcaggggagtgtctgggggcctt 756
Query: 61 ttgggatagcatttgaaatgtaaatgaagaaaatacctaattaaaaaaataaattaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttgggatagcatttgaaatgtaaatgaagaaaatacctaattaaaaaaataaattaaaaa 696
Query: 121 aaatcaaaaacaggaagaaaaaaaaaagccacagttgctaaaagtataaaaatagtgagc 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aaatcaaaaacaggaag-aaaaaaaaagccacagttgctaaaagtataaaaatagtgagc 637
Query: 181 ctaattcgaggtaattacttaaacatatacacaaattttgatgat----aagaaaaactt 236
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 636 ctaattcgaggtaattacttaaacatatacacaaattttgatgataaaaaagaaaaactt 577
Query: 237 tcagtatcaaatgcaacttagctaattaaaatcattataatataccttccacatttcctt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tcagtatcaaatgcaacttagctaattaaaatcattataatataccttccacatttcctt 517
Query: 297 ctgacatttgtggagacacctcagtaaactttggacttttcgtttcagtagaatcaacag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctgacatttgtggagacacctcagtaaactttggacttttcgtttcagtagaatcaacag 457
Query: 357 tagctgatggatttatttcttttgaaatgcactgcagattctcttcttcagtaagtaagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagctgatggatttatttcttttgaaatgcactgcagattctcttcttcagtaagtaagg 397
Query: 417 gtttgtagttctcctcttcagcataaacctctgcagaagcaaaagaatgaaaagtctact 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtttgtagttctcctcttcagcataaacctctgcagaagcaaaagaatgaaaagtctact 337
Query: 477 gctctcaaaaggt 489
|||||||||||||
Sbjct: 336 gctctcaaaaggt 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 892
Length adjustment: 10
Effective length of query: 479
Effective length of database: 882
Effective search space: 422478
Effective search space used: 422478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
