Query= MSMg01no349_d01.b1 MSMg01no349_d01.b1 CHROMAT_FILE:
MSMg01no349_d01.b1 PHD_FILE: MSMg01no349_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:44 2005
(598 letters)
>mm_chr8_61809452_61810449
Length = 998
Score = 1106 bits (572), Expect = 0.0
Identities = 588/594 (98%), Gaps = 2/594 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagtttgaaattgagaggaaagtgcacaggatttgaaagagataaactaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtttgaaattgagaggaaagtgcacaggatttgaaagagataaactaaagca 264
Query: 65 actatcacaagtccttgaagcgtggttagctaaggacatataacacatcccccaaaacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actatcacaagtccttgaagcgtggttagctaaggacatataacacatcccccaaaacaa 324
Query: 125 ttatatggtactcacaaacaacaataaaaaaatttattgaaaacaagtatagacatctta 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 ttatatggtactcacaaacaacaataaaaaaagttattgaaaacaagtatagacatctta 384
Query: 185 ggcaaagttgacctatgctaaaataaaaatgtgtgtgcatgtgcatatgtgcatgcaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcaaagttgacctatgctaaaataaaaatgtgtgtgcatgtgcatatgtgcatgcaggt 444
Query: 245 gcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaatgattagtgatagggat 304
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--ttaaatgattagtgatagggat 502
Query: 305 acttcagtcaggattattgtgtgtaatacacaactgtgtttatgcaataggagagtgtga 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acttcactcaggattattgtgtgtaatacacaactgtgtttatgcaataggagagtgtga 562
Query: 365 tcagattcaactatgaatataggggtaaatttggagccaagaagcaaagtagaggagcca 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 563 tcagattcaactatgaatataggggtaaatttggagccaagaagaaaagtagaggagcca 622
Query: 425 aaggacacaaaatggctaaaggggctacaacaagtccttcatggccactgtggaagggct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaggacacaaaatggctaaaggggctacaacaagtccttcatggccactgtggaagggct 682
Query: 485 ctgagatatggttcctgcccctggagcagagttcgcagggtgtgggcatccacaagtgtc 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atgagatatggttcctgcccctggagcagagttcgcagggtgtgggcatccacaagtgtc 742
Query: 545 tatggttgttaggcataaggcttgtttttatattttacttaatgctccttttgg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tatggttgttaggcataaggcttgtttttatattttacttaatgctccttttgg 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_d01.g1 MSMg01no349_d01.g1 CHROMAT_FILE:
MSMg01no349_d01.g1 PHD_FILE: MSMg01no349_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:44 2005
(552 letters)
>mm_chr8_61986899_61987850
Length = 952
Score = 907 bits (469), Expect = 0.0
Identities = 534/571 (93%), Gaps = 26/571 (4%)
Strand = Plus / Minus
Query: 1 actgacagagacacattaacagaggcacacacagagacagaacaaatacataaatacata 60
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 695 actgacagagacacattaacagagtcacacacagagacagaacaaagacataaatacata 636
Query: 61 catagacacacattataaatacaaatattttcaacaataaatttcaaaaaataaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 catagacacacattataaatacaaatattttcaacaataaatttcaaaaaataaaaaata 576
Query: 121 tttaggttaggaatacaaaaacctagattatgtcccaaattttactggtgttctagagta 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttaggttaggaatataaaaacctagattatgtcccaaattttactggtgttctagagta 516
Query: 181 tgtacactttgaaattggtgattctttgtaatttatgaaattcatgcagctttcagtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgtacactttgaaattggtgattctttgtaatttatgaaattcatgcagctttcagtcct 456
Query: 241 tcatacaaagggacagtatcatttcctaatgtgctgcttcttataagttatcagtggttg 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 455 tcatacaaagggacagtatcatttcctaatgtgctgctccttataagttatcagtggttg 396
Query: 301 ttgttagagacagacctcagggctagacatgcaggcatggatattacaagtagggagtga 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 395 ttgttagagacagacctcagggctagacatgcaggcatggatattacaattagggagtga 336
Query: 361 aaataatcattcatatatatatatgtgtgtgtgtgtgtgtgtgcat----------ataa 410
|||||||||||||||||||| | |||||||||||||||||||| | ||||
Sbjct: 335 aaataatcattcatatatatgtgtgtgtgtgtgtgtgtgtgtg--tgtgtgtgtgtataa 278
Query: 411 atacgtatacacatatatgtgtgtataaatacatatacatatatgtgtgtatatatat-- 468
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atacatatacacaaatatgtgtgtataaatacatatacatatatgtgtgtatatatatgt 218
Query: 469 ------------atgtacatatatacataatatttacataaatcactttctagatataca 516
|| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atatatatatatatatatatatatacataatatttacataaatcactttctagatataca 158
Query: 517 ggaaatgagttctgattcttttaaactatat 547
|||||||||||||||||||||||||||||||
Sbjct: 157 ggaaatgagttctgattcttttaaactatat 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
