BAC Information

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BAC

Clone NameMSMg01-350F09
Chromosome8 (Build37)
Map Location 79,365,662 - 79,365,967
singlet/doubletsinglet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226
Downstream geneLOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350F09.T7 (MSMg01no350_f09.b1)MSMg01-350F09.TJ (MSMg01no350_f09.g1)
ACCAG461973AG461974
length734701
length of high quality
(start - end)
564 (55 - 618)307 (82 - 388)
definitionCHROMAT_FILE: MSMg01no350_f09.b1 PHD_FILE: MSMg01no350_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:14 2005CHROMAT_FILE: MSMg01no350_f09.g1 PHD_FILE: MSMg01no350_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTATCATAGACTAGAAGAGCCAATGCCAATACTCCTC
ANACTATTCCAGAATAAAGAAACAGAAGGAACACTGCCAAACACATTTTA
TGAAGTTATGGTCATCTTGATACTTAAACCACACAAAGATGCTACAATTT
CCCTTATGAACGTTGATTTAAAAATACTCAATAAAATACTCGCACCCAAA
ATCCAAGAACACATCAAAGACGTCATCCACCATGACCAAGTAGGCTTCAT
CCTATAGATGTAGGGGTGGTCCAATATACGAAAATCCATCAGCATAATCC
ACTATATAAACAAACTGAAGAAAAACCCATACAATCTTCTCATTAGATGC
CAAAAAAGATTTTGACAAAATCCAACACCCTTCATGATAAAAGTCTTGGA
GAGAGCAGGGATATAAGGTGCATACCAGAACACGAATAAAGGCAATATAC
AGTAAGCCAACAGCTAACATCACATTAAATGGAGAGAAGCATTTCCATTA
AAATTGGGGGTGGGGAGCTGGACAACACAAGGATGTTCAACTCTTCCCAT
ATCTTTTCAATATAGGACTTGAAGTTCTAGCCAGATCAATAAAATAACTA
GAGGCCATTAAGGGAATATAAATTATAAAGAAAGAAGTCTAAACATTGCT
ATTTCCCGAAGATATGAAAATATCCCTAACTGAC
CCATTTCTCCAATGATATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTTTTATTTGACTGG
AGGGGGGGGTGACATAGTGAACTAAAATGGCAGAGTTCCTGAGCTTGATG
ACTAAAGACTATGTACACTAAGGACAATTTAAGACAGCTTCCTGGCTGAA
ATGATCATGTTAACTGAGGAAAAGACATCATTCTAGANCATGGGTTCACC
ATCCCATGGGCTACAGTTCTTGGCTCCCTGACTGCAGATGCAATGGAACC
AGCTACTCCAGGCTCCCATTGCTGTGTTGTCCCTGCCATGATATATTATA
GCCTGGAGCTGTGATCCAAGATAAACATTCTTTCCATGAGATAGTTTTGT
CAGGTTCCTCCTAGCCCCCAATGAAAAAAAGAAATTATGAACCAATTCCC
TACTTTTTAAGAAACATTAAACATACCCCAAATCCCAAAAAAAAAAAATC
TTGGAAAGGCGCTGGGGGGGCTTCCTTTTTTCCCCCGAGGGGGGCCCCCC
AAAAAAAAATGGGGGTTTTTTTTTTTTTTTAAAACAAAATCCCCAGGGGC
GTGTTTCTTTCTCCTGCCTTTTTTCTATAAACTCATTTATTTTGTGGCCC
CCCCCTTCTTTCTTTCCTTTTCTTTTTATCTTTCTCCCTCTCCCCTCTCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_f09.g1 MSMg01no350_f09.g1 CHROMAT_FILE:
MSMg01no350_f09.g1 PHD_FILE: MSMg01no350_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:14 2005
         (307 letters)



>mm_chr8_79365462_79366167
          Length = 706

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%), Gaps = 3/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcttttatttgactggaggggggggtgacatagtgaactaaaatggcagagttcctg 60
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ctatattttatttgactggaggggggg-tgacatagtgaactaaaatggcagagttcctg 259

                                                                       
Query: 61  agcttgatgactaaagactatgtacactaaggacaatttaagacagcttcctggctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcttgatgactaaagactatgtacactaaggacaatttaagacagcttcctggctgaaa 319

                                                                       
Query: 121 tgatcatgttaactgagg-aaaagacatcattctagancatgggttcaccatcccatggg 179
           |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 320 tgatcatgttaactgaggtaaaagacatcactctaga-catgggttcaccatcccatggg 378

                                                                       
Query: 180 ctacagttcttggctccctgactgcagatgcaatggaaccagctactccaggctcccatt 239
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctacagttcttggctccctaactgcagatgcaatggaaccagctactccaggctcccatt 438

                                                                       
Query: 240 gctgtgttgtccctgccatgatatattatagcctggagctgtgatccaagataaacattc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctgtgttgtccctgccatgatatattatagcctggagctgtgatccaagataaacattc 498

                   
Query: 300 tttccatg 307
           ||||||||
Sbjct: 499 tttccatg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space:   207706
Effective search space used:   207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)