BAC Information

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BAC

Clone NameMSMg01-351E14
Chromosome8 (Build37)
Map Location 120,447,419 - 120,600,826
singlet/doubletdoublet
Overlap genenone
Upstream gene2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351E14.T7 (MSMg01no351_e14.b1)MSMg01-351E14.TJ (MSMg01no351_e14.g1)
ACCAG462695AG462696
length731736
length of high quality
(start - end)		567 (53 - 619)541 (82 - 622)
definitionCHROMAT_FILE: MSMg01no351_e14.b1 PHD_FILE: MSMg01no351_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:29 2005CHROMAT_FILE: MSMg01no351_e14.g1 PHD_FILE: MSMg01no351_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,447,419 - 120,447,981)(120,600,286 - 120,600,826)
sequence
TTTTTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTCCTGTTATGCTAGGTTTCTACAAGAGCAAACTTAG
CAGTGCTGTGAATCTGGCTGAGTTCCAACAATGCTCCCTGGTGTGTCCCT
TCCATTTGGAATCATAGATATTTACCTCTTATCTGAGTCTTTGCACCCCT
CCTCAAGCTTGCCCATGTCATTATGAAGACTTCCTGTGTTGCTGCCTTGT
CACTGAGATAGACTACTTGACAGAACCACCTTAAGGGAGGGAGGATTGAC
TTTTGGCTCCTGGCTTAAAGGGAGGGAGCTTGTGGCATAGCTTGCTCATA
TTGTTCAAGGAAAGACCTTGGGACAGAATGAGAAGTCAATGCCATAAGGT
CTCCCGCCCGCTACACCCTTCTACTAGTTACAGCATAGTTCTACAGATTT
CAGAACCTCTCAAACAAAGCCATTAGCTGGGAACCAAGTGTTCCAACACA
GGAGCCTATGGAAGGCTTATCTGGGGGGTGGGTGGGCATTGCACATTANA
ATCCCTAATAGTTTTCATCCACTTTCAATTTCAACCATGATATTTGTTTC
CAGCCTGAACCTAACTAGCACAACCACGCAATTCCTCTTGTCCCACGGCA
GGTTAGCTATTAAATCACAGGATTGAGCACGAATCCAGGTCTAAACAGAA
CTCCGAATATAAAGTTTGCTACCTTCACCTG

NNNNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGCTACTTCAGATTTA
ACTAGACTTAGAGAGCCAAAAGGATGTGACATTTTCACTGTGGATTGTGG
GATAAAATGCATCCTGCGGCACAGATAAGGAACAATGGCCGCAGCTGGGG
ACTAGCATTGACCTTGCTAAGAAAGCTATGGCATGAAGGTCCTGAGGAGG
TGAGAAAGGTGTCAAAACAAATTAGGTGTCCATATAGATAACATTATAGA
ACAAGCCAAGATAAGGGAACAAAAGCATATCCTTGGCTGGCTAGAGATCG
GAGAATAAAGAAGAAACCGCTGTGGGTGGCCTCCAGAGAGGGTGATGGGC
AAGGAGGAGGTCGAGGCAAGGAGATAGGAGGAAAGGAGGAGCGGGAGGGG
CAAAGGGCTAAGCAGATGATTGAATGAACAGATATGGATAAACAGAGCAT
TATTGTACATCTGTCTGCTTGGTGTACACACCCCTACCCCATCCCTGATG
CCATCCTCTCCCCTGCACACACACTGGTGGACAGGACAGGATGCAGAGGG
AAAGCTGGCTTTCCTGGGCCCGTTGTTATGCACCAAGGTGGGCTTATCTC
TCCCAGGATGGCTTCGAACAGGATGACATGTAAATGGCACAACAGCTTTG
CTGCCTGCTAAGCTGGGATTGGAAGAAAAAGATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_e14.b1 MSMg01no351_e14.b1 CHROMAT_FILE:
MSMg01no351_e14.b1 PHD_FILE: MSMg01no351_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:29 2005
         (567 letters)



>mm_chr8_120447215_120448181
          Length = 967

 Score = 1075 bits (556), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcctgttatgctaggtttctacaagagcaaacttagcagtgctgtgaatctg 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcctggtatgctaggtttctacaagagcaaacttagcagtgctgtgaatctg 264

                                                                       
Query: 65  gctgagttccaacaatgctccctggtgtgtcccttccatttggaatcatagatatttacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgagttccaacaatgctccctggtgtgtcccttccatttggaatcatagatatttacc 324

                                                                       
Query: 125 tcttatctgagtctttgcacccctcctcaagcttgcccatgtcattatgaagacttcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttatctgagtctttgcacccctcctcaagcttgcccatgtcattatgaagacttcctg 384

                                                                       
Query: 185 tgttgctgccttgtcactgagatagactacttgacagaaccaccttaagggagggaggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttgctgccttgtcactgagatagactacttgacagaaccaccttaagggagggaggat 444

                                                                       
Query: 245 tgacttttggctcctggcttaaagggagggagcttgtggcatagcttgctcatattgttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacttttggctcctggcttaaagggagggagcttgtggcatagcttgctcatattgttc 504

                                                                       
Query: 305 aaggaaagaccttgggacagaatgagaagtcaatgccataaggtctcccgcccgctacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggaaagaccttgggacagaatgagaagtcaatgccataaggtctcccgcccgctacac 564

                                                                       
Query: 365 ccttctactagttacagcatagttctacagatttcagaacctctcaaacaaagccattag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttctactagttacagcatagttctacagatttcagaacctctcaaacaaagccattag 624

                                                                       
Query: 425 ctgggaaccaagtgttccaacacaggagcctatggaaggcttatctggggggtgggtggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgggaaccaagtgttccaacacaggagcctatggaaggcttatctggggggtgggtggg 684

                                                                       
Query: 485 cattgcacattanaatccctaatagttttcatccactttcaatttcaaccatgatatttg 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattgcacattaaaatccctaatagttttcatccactttcaatttcaaccatgatatttg 744

                                  
Query: 545 tttccagcctgaacctaactagc 567
           |||||||||||||||||||||||
Sbjct: 745 tttccagcctgaacctaactagc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_e14.g1 MSMg01no351_e14.g1 CHROMAT_FILE:
MSMg01no351_e14.g1 PHD_FILE: MSMg01no351_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:30 2005
         (541 letters)



>mm_chr8_120600086_120601026
          Length = 941

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgctacttcagatttaactagacttagagagccaaaaggatgtgacattttcactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttgctacttcagatttaactagacttagagagccaaaaggatgtgacattttcactgt 682

                                                                       
Query: 61  ggattgtgggataaaatgcatcctgcggcacagataaggaacaatggccgcagctgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggattgtgggataaaatgcatcctgcggcacagataaggaacaatggccgcagctgggga 622

                                                                       
Query: 121 ctagcattgaccttgctaagaaagctatggcatgaaggtcctgaggaggtgagaaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagcattgaccttgctaagaaagctatggcatgaaggtcctgaggaggtgagaaaggtg 562

                                                                       
Query: 181 tcaaaacaaattaggtgtccatatagataacattatagaacaagccaagataagggaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaacaaattaggtgtccatatagataacattatagaacaagccaagataagggaaca 502

                                                                       
Query: 241 aaagcatatccttggctggctagagatcggagaataaagaagaaaccgctgtgggtggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagcatatccttggctggctagagatcggagaataaagaagaaaccgctgtgggtggcc 442

                                                                       
Query: 301 tccagagagggtgatgggcaaggaggaggtcgaggcaaggagataggaggaaaggaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagagagggtgatgggcaaggaggaggtcgaggcaaggagataggaggaaaggaggag 382

                                                                       
Query: 361 cgggaggggcaaagggctaagcagatgattgaatgaacagatatggataaacagagcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggaggggcaaagggctaagcagatgattgaatgaacagatatggataaacagagcatt 322

                                                                       
Query: 421 attgtacatctgtctgcttggtgtacacacccctaccccatccctgatgccatcctctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtacatctgtctgcttggtgtacacacccctaccccatccctgatgccatcctctcc 262

                                                                       
Query: 481 cctgcacacacactggtggacaggacaggatgcagagggaaagctggctttcctgggccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcacacacactggtggacaggacaggatgcagagggaaagctggctttcctgggccc 202

            
Query: 541 g 541
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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