BAC Information

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BAC

Clone NameMSMg01-351O13
Chromosome8 (Build37)
Map Location 42,295,874 - 42,441,966
singlet/doubletdoublet
Overlap geneFgl1, Pcm1, Asah1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1
Downstream geneFrg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351O13.T7 (MSMg01no351_o13.b1)MSMg01-351O13.TJ (MSMg01no351_o13.g1)
ACCAG463166AG463167
length727738
length of high quality
(start - end)		563 (56 - 618)573 (84 - 656)
definitionCHROMAT_FILE: MSMg01no351_o13.b1 PHD_FILE: MSMg01no351_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:16 2005CHROMAT_FILE: MSMg01no351_o13.g1 PHD_FILE: MSMg01no351_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,295,874 - 42,296,432)(42,441,394 - 42,441,966)
sequence
NNGGGAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTCATGTTACCAGATTAAGTTCCAGAGCACCTGAG
GGTTAGCCAGAAATGTATCCTCTATTTACCGTCCAGCCTTCTGACACACA
GAACGATGGGAGTCAACCCCATCGAAGCTTAGAAATAACTGAACCTGCTC
AATAACACAGACACACAAAAGGGTTCAGTTTCATCAAGGCCTCAAGTGCG
CCGAGTCAAGAGAGTCTCTCCTTATACAGAGAGACCTGGGACCATATTTT
GGCCCAGCCTGAGGAAATTTTGAGATAATATTCTTAGTTTATTTGGACAT
GCAGGTGCTAAATGAATACCAGATAACGATGTGAAATACTAGTCTTTTAA
GAGGAGAATTATTTTTATATTTAGAAGAAGAAAGTTGTTAAGAGGAGGCT
GGTGTGCACTGTTCTTTTTTCTTTTTCTCTTGGTATTGTTTGTTTTGTGG
TTGTTTGTTTTTCTAAGACAGGTTCTCACTATGTAGTCTCCTGGTTAGGC
TAGAACTTCCTATGTATGCCAGGCTGGCCTTGAACTCACAGAGACTTACC
TGTCTCTGTACCTACCTCCCAAGCGCTGCACACTGTCTTGATATCTTAAT
ATGTAAGCCAGAAATCTTAGTAATATAAGATCTTTAGCCCTGCATTATTA
AATTTGTGGGAGAAAGCTAAAGTAACN

NTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCATCCTTGACTA
CATAGTAAGATGAAGGCCAACCGGGGCAGCATGAGACCTTGTCTCAACCC
CAGCTCCCCAAATGGGTCAGACAATGAAGGTGCAATAGCAGTAGAAGCAA
CTGTAGGGTTAGTACACCCGGAGTATAGCCATCCATTACTAATGGGTGGA
CATCACTTCACCCCATAGCAGGGATTGCTGAGTGTGTGAGTAGGAAGTCG
AGAATGTTGGTGGCAGATTAGACAGGCAAGATTGTACAGGAGCACTGGGG
AAGATGGGCTGGCCTTGGAGAACCAGAGGCCATCTTGGGAAGCTTGTATT
GTTACCACTCTGGGCTTACAGGTGACCTCACTAACCCAATCACAAAGGAA
CTCACACAATATGTAATCACTGATAAGTGGATATTAGCCCAGAAACTTAG
GATACCCAAGATATAAGATACAATTTGCTAAATGCATGAAATTCAAGAAG
AACGAAGACCAAAGTGTGGACACTTTACCCTTTCTTAGAAATGGGAACAA
AACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAGCTGTGACGAAAG
GATGGACCATCTAGTGATTGCCATATGCANGGATCCATCCCATAATCAGC
CTCCAAACGCTGACACCATTGCATACACTAGCAAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_o13.b1 MSMg01no351_o13.b1 CHROMAT_FILE:
MSMg01no351_o13.b1 PHD_FILE: MSMg01no351_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:16 2005
         (563 letters)



>mm_chr8_42295670_42296632
          Length = 963

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatgttaccagattaagttccagagcacctgagggttagccagaaatgtatc 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatgagaccagattaagttccagagcacctgagggttagccagaaatgtatc 264

                                                                       
Query: 65  ctctatttaccgtccagccttctgacacacagaacgatgggagtcaaccccatcgaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctatttaccgtccagccttctgacacacagaacgatgggagtcaaccccatcgaagct 324

                                                                       
Query: 125 tagaaataactgaacctgctcaataacacagacacacaaaagggttcagtttcatcaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagaaataactgaacctgctcaataacacagacacacaaaagggttcagtttcatcaagg 384

                                                                       
Query: 185 cctcaagtgcgccgagtcaagagagtctctccttatacagagagacctgggaccatattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctcaagtgcgccgagtcaagagagtctctccttatacagagagacctgggaccatattt 444

                                                                       
Query: 245 tggcccagcctgaggaaattttgagataatattcttagtttatttggacatgcaggtgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcccagcctgaggaaattttgagataatattcttagtttatttggacatgcaggtgct 504

                                                                       
Query: 305 aaatgaataccagataacgatgtgaaatactagtcttttaagaggagaattatttttata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgaataccagataacgatgtgaaatactagtcttttaagaggagaattatttttata 564

                                                                       
Query: 365 tttagaagaagaaagttgttaagaggaggctggtgtgcactgttcttttttctttttctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttagaagaagaaagttgttaagaggaggctggtgtgcactgttcttttttctttttctc 624

                                                                       
Query: 425 ttggtattgtttgttttgtggttgtttgtttttctaagacaggttctcactatgtagtct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttggtattgtttgttttgtggttgtttgtttttctaagacaggttctcactatgtagtct 684

                                                                       
Query: 485 cctggttaggctagaacttcctatgtatgccaggctggccttgaactcacagagacttac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctggttaggctagaacttcctatgtatgccaggctggccttgaactcacagagacttac 744

                              
Query: 545 ctgtctctgtacctacctc 563
           |||||||||||||||||||
Sbjct: 745 ctgtctctgtacctacctc 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_o13.g1 MSMg01no351_o13.g1 CHROMAT_FILE:
MSMg01no351_o13.g1 PHD_FILE: MSMg01no351_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:16 2005
         (573 letters)



>mm_chr8_42441355_42442327
          Length = 973

 Score = 1100 bits (569), Expect = 0.0
 Identities = 572/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccatccttgactacatagtaagatgaaggccaaccggggcagcatgagaccttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaggccatccttgactacatagtaagatgaaggccaaccggggcagcatgagaccttgtc 553

                                                                       
Query: 61  tcaaccccagctccccaaatgggtcagacaatgaaggtgcaatagcagtagaagcaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcaaccccagctccccaaatgggtcagacaatgaaggtgcaatagcagtagaagcaactg 493

                                                                       
Query: 121 tagggttagtacacccggagtatagccatccattactaatgggtggacatcacttcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tagggttagtacacccggagtatagccatccattactaatgggtggacatcacttcaccc 433

                                                                       
Query: 181 catagcagggattgctgagtgtgtgagtaggaagtcgagaatgttggtggcagattagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catagcagggattgctgagtgtgtgagtaggaagtcgagaatgttggtggcagattagac 373

                                                                       
Query: 241 aggcaagattgtacaggagcactggggaagatgggctggccttggagaaccagaggccat 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggcaagagtgtacaggagcactggggaagatgggctggccttggagaaccagaggccat 313

                                                                       
Query: 301 cttgggaagcttgtattgttaccactctgggcttacaggtgacctcactaacccaatcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttgggaagcttgtattgttaccactctgggcttacaggtgacctcactaacccaatcac 253

                                                                       
Query: 361 aaaggaactcacacaatatgtaatcactgataagtggatattagcccagaaacttaggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaggaactcacacaatatgtaatcactgataagtggatattagcccagaaacttaggat 193

                                                                       
Query: 421 acccaagatataagatacaatttgctaaatgcatgaaattcaagaagaacgaagaccaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 acccaagatataagatacaatttgctaaatgcatgaaattcaagaagaacgaagaccaaa 133

                                                                       
Query: 481 gtgtggacactttaccctttcttagaaatgggaacaaaacacccatggaaggagttacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtgtggacactttaccctttcttagaaatgggaacaaaacacccatggaaggagttacag 73

                                            
Query: 541 agacaaaatttggagctgtgacgaaaggatgga 573
           |||||||||||||||||||||||||||||||||
Sbjct: 72  agacaaaatttggagctgtgacgaaaggatgga 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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