BAC Information

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BAC

Clone NameMSMg01-352L16
Chromosome8 (Build37)
Map Location 116,053,058 - 116,053,439
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L16.T7 (MSMg01no352_l16.b1)MSMg01-352L16.TJ (MSMg01no352_l16.g1)
ACCAG463784AG463785
length783784
length of high quality
(start - end)
273 (49 - 321)382 (80 - 461)
definitionCHROMAT_FILE: MSMg01no352_l16.b1 PHD_FILE: MSMg01no352_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:22 2005CHROMAT_FILE: MSMg01no352_l16.g1 PHD_FILE: MSMg01no352_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGATTTCCTACTGGGAAGGGGGGAAGCATTTTGGATGTAA
ATAAATAAGATAAATAAACAAATAAATATTTTTTAAAAACACCATACTTG
ATTTCAAGTTATATTCTAGAGCCATAGTAAGAAAAACAGTGTGGCATTGT
CACAAAACATGCGTGGGTCTATGGACAACAACAGAGGACTGGGGTGTATA
CTCATAGAATATGACAGCTGAGTTTTGATAAAGATGCCAAACACAGAAGA
GAAGCCAGAGTTTTCAACAAATGTTTCTGGGCAAACTGGATGTCCACAAG
CGGAAAGGTGAGATTAGATTGCTGCCTCTCAACCTGTAAAGAGCCAACTC
TCAATGGATCAAAGACCTCAGCGGGAGACTTGAAACTCTCCAACTGTTAT
AGGAGGAAATACTTCAAAAACTAGGTTCAGACAAGGCTTTCCTGAATCGC
ACTTCCCCTGCTTGCGAAATAATGACACCTCGCGAACTCCACAGGTTTCT
CAGTTCACTGCTTCTTTTTTCCCCTCCTACCCCCCTATTACCACTATCCC
CTAACCCCGCTTATTCTTTTTCCCTTCATTATATCACACTTTTCACTCTA
TTAACACCCCATCCATTTTTTTTTATTCAATCTTATTCGTTTATACCCCC
CCCCCTAATATTTCTTTCATCGACTCTCTCCCTAAAATACATCCAACCTC
TACCCCGCCTACTACCCACTTCACCCTCTCCTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTACAGAGACCGCAGGAA
ACAGGGAACTGAGGAGAGTCCAGAACACAATCTCTGTCAACAGTGGTACT
GTACTGTCAAGGCTGCTGTAGGTGGCAAATGGGTGACATCAGTCAAAACT
CAGTTGGGCAGGGTCTAAATGCAGAGTCCTACTGTCAAAGTCTGCATCAC
TGAATCAGTCCCATGGACACACGAATGTGACCTCTCTGTGTAATCTTCCT
TCCACCTGCACACAAACATGTGCTGTGTGTGCAGACTTGAAAACATAATC
AAGCCGGGCACTGGTGGCGCACGCCTTTAATCCCAGCACTTGTGAGGCAG
AGGTAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT
CCAGGAAAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAATTAAAAGA
AAGACCGAACGAATGAAATACAGAACGAACGAAAGAAAGATAGGAAGGAA
GGTATGAATCCAGCTAGCTATCTCTTTTCCCCCCCTTTTCCCTTCTCTTT
CTATCATTTACCCTTCCCCGCTTTTTTTCCCTCTTATCCCCTTTTCCCCT
TTCTTTCCCCCCTTTCTTTTCCTTTTTTCTTTTTATTCCCCTTTTCCCCC
TTTTCTCCTTCTCTTACCCTTCCCCCCCCCATTTTTTTTTTATCCCCCTT
TCTCTTTTCATTCCCTTTATCCCTTCTCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l16.g1 MSMg01no352_l16.g1 CHROMAT_FILE:
MSMg01no352_l16.g1 PHD_FILE: MSMg01no352_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:23 2005
         (382 letters)



>mm_chr8_116052858_116053639
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctacagagaccgcaggaaacagggaactgaggagagtccagaacacaatctctgtca 60
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttcctatagagactgcaggaaacagggaactgaggagagtccagaacacaatccctgtca 260

                                                                       
Query: 61  acagtggtactgtactgtcaaggctgctgtaggtggcaaatgggtgacatcagtcaaaac 120
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtgatactgtactgtcaaggctgctgtaggtggcaaatgggtgacatcagtcaaaac 320

                                                                       
Query: 121 tcagttgggcagggtctaaatgcagagtcctactgtcaaagtctgcatcactgaatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagttgggcagggtctaaatgcagagtcctactgtcaaagtctgcatcactgaatcagt 380

                                                                       
Query: 181 cccatggacacacgaatgtgacctctctgtgtaatcttccttccacctgcacacaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatggacacacgaatgtgacctctctgtgtaatcttccttccacctgcacacaaacat 440

                                                                       
Query: 241 gtgctgtgtgtgcagacttgaaaacataatcaagccgggcactggtggcgcacgccttta 300
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 441 gtgctgtgtgtgcagacttgaaaacataatcaagctgggcagtggtggcgcacgccttta 500

                                                                       
Query: 301 atcccagcacttgtgaggcagaggtaggcagatttctgagttcgaggccagcctggtcta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 atcccagcacttgtgaggcagaggtaggcagatttctgagttcgaggccagcctgggcta 560

                                 
Query: 361 cagagtgagttccaggaaagcc 382
           ||||||||||||||||||||||
Sbjct: 561 cagagtgagttccaggaaagcc 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)