Query= MSMg01no354_e23.b1 MSMg01no354_e23.b1 CHROMAT_FILE:
MSMg01no354_e23.b1 PHD_FILE: MSMg01no354_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:25 2005
(490 letters)
>mm_chr8_90642948_90643837
Length = 890
Score = 891 bits (461), Expect = 0.0
Identities = 484/497 (97%), Gaps = 11/497 (2%)
Strand = Plus / Minus
Query: 5 gaattcagttctctatctgctctttctagtccg------aacttgataaaatgaaatttt 58
||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 720 gaattcagttctctatctgctctttctagtccgaaatgaaatttgataaaatgaaatttt 661
Query: 59 agatcgacaaactccaacaggtcttgcacatcaaattacttgtgtcacgcaccgtttgct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agatcgacaaactccaacaggtcttgcacatcaaattacttgtgtcacgcaccgtttgct 601
Query: 119 tatataataacaattttaagtacacaacaaaaacatcatttttcgttcatcccaatttct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tatataataacaattttaagtacacaacaaaaacatcatttttcgttcatcccaatttct 541
Query: 179 ggaaaccagttggtctacttttagaagcttgaaaactggtatgctggaagaccagcagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaaaccagttggtctacttttagaagcttgaaaactggtatgctggaagaccagcagca 481
Query: 239 acttcagccaaaagtcaaaagctaaaactggggggtgcggtggagggtgtttacaaataa 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acttcagccaagagtcaaaagctaaaactggggggtgcggtggagggtgtttacaaataa 421
Query: 299 atggaccaaactccagcttaattctaattctgtggaaccaagaacttcctgttgaaacat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atggaccaaactccagcttaattctaattctgtggaaccaagaacttcctgttgaaacat 361
Query: 359 caaaatccatgaggtctaattgactgcaattatccgattccggccctagctcttatcatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caaaatccatgaggtctaattgactgcaattatccgattccggccctagctcttatcatt 301
Query: 419 aattgatggctatgtagtatgggcttactagacttccatacacagataacgggctgt--- 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aattgatggctatgtagtatgggcttactagacttccatacacagataacgggctgtaca 241
Query: 476 -acatactccc-tatcc 490
|||||||||| |||||
Sbjct: 240 aacatactcccttatcc 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_e23.g1 MSMg01no354_e23.g1 CHROMAT_FILE:
MSMg01no354_e23.g1 PHD_FILE: MSMg01no354_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:25 2005
(411 letters)
>mm_chr8_90434499_90435310
Length = 812
Score = 694 bits (359), Expect = 0.0
Identities = 394/411 (95%), Gaps = 10/411 (2%)
Strand = Plus / Plus
Query: 1 aagagcccctagctttttgtgactgttcccaagaattagcacctcttctttttataaaca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagcccctagctttttgtaactgttcccaagaattagcacctcttctttttataaaca 260
Query: 61 tttcctggatacgtttataaaactgaatacatatgtatacaatgtataaatcaggtatat 120
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 261 tttcctggatacgtttataaaactgaatacatacgtatacaatgtgtaaatcaggtatat 320
Query: 121 tgaacagttaaaaatcaaggaactcaaagaagagcaacttctcaggcttagacactttgt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacagttaaacatcaaggaactcaaagaagagcaacttctcaggcttagacactttgt 380
Query: 181 tacaactttgcagaaggctggagcaggattcggaccgcagcatgagtgaacacagccaac 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tacaactttgcagaaggctggagcaggattcggacctcagcatgagtgaacacagccaac 440
Query: 241 atcttttcccaccaaatcgtgagtagacg-agacaactgctacgatgggtcctaccacgg 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 atcttttcccaccaaatcgtgagtagacggagacaactgctacgatgggtcctaccacgg 500
Query: 300 gaggcttggggactaatctaacaagtcccgtgttgctatatgtctgggtggcttcacctg 359
| |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 501 g---------gactaatctaacaagtccggtgttgctagatgtctgggtggcttcacctg 551
Query: 360 ttccccactgccagtgactatctaggctgcatcaaacattcacaagcatca 410
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttccccactgccagtgactatctaggctgcatcaaacattcacaagcatca 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space: 322806
Effective search space used: 322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
