BAC Information

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BAC

Clone NameMSMg01-354O20
Chromosome8 (Build37)
Map Location 58,931,857 - 58,932,292
singlet/doubletsinglet
Overlap geneLOC664948
Upstream geneGm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd
Downstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354O20.T7 (MSMg01no354_o20.b1)MSMg01-354O20.TJ (MSMg01no354_o20.g1)
ACCAG465437AG465438
length770781
length of high quality
(start - end)
363 (44 - 406)503 (77 - 579)
definitionCHROMAT_FILE: MSMg01no354_o20.b1 PHD_FILE: MSMg01no354_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:14 2005CHROMAT_FILE: MSMg01no354_o20.g1 PHD_FILE: MSMg01no354_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAA
AACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCANNCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCATATGCC
CCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACNCTTTGTTT
GTACTATTCAGCTATTATAAACAACGAANTTATGAAATTCCTGGTCAAAT
GGATGGACCTGGAGGTCATCATCCTGANCGACGTACCTCATTCTCTCAAT
GAATCCCGCCCTATCCTCTCTCTGATATGCGTACATTACCTCCCTACTCT
GGCATANCCCTTCTTCTACATACCANTTCTTTCCACGTTTTANCGCTCCG
TACCGACGATTACCGAGCTGTCGCACCCCTCGCCCGCCTCTTACTAANGG
GCCCTCTCTCTTCCCCNNGA
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTCAGTTCAAAGCTTGGTT
TCCTCTTTAGTATCATTTAGCTATTAATAAAGGAAAGTAACAGCAGTTGG
CCCAGGAAGGAAAGTGGCAAAGCATCCATCTCATAAGCCTCATTTCTGGA
GGGAATTATGAAGCCTGTATGATTATAACTGGACCTTGAAATGGGAAGGA
GAACATTAGACAGGGAAAAAAAAACCAAACATGTAAATACGATGAGACTT
AAAGAGGAAAATCTTCTCCATTGTATGGCTTGGGCTTCCTTGTCAAAAAT
CAAGTGTCTATAGGTGTGTGGCTTTACTTTTGGGTCTTCAGTTCTATTTC
ACTGATCAACCTGTCTGTCACTGTACCAATAGTGTATGGTTTTTATCACT
GTTTCTCTGTAGTACAGTTTGAGGTCAGGGATAGCGGTTTTCGCCAGACA
CTCTTTTATTGTTCAGGGTTGTTTTAGCTATCCTGCATTTGTTGTTGTTG
TTGTTTTGTTTTTCCATATGAAGTTGAGAATTGTTCTTTCAAGATAGGTA
AAGAATTATGAATTTTGATTGGAATTGCATTGGAATTGGTAAAATTGCCC
TTTTCCCTAAATTAATCCAACTGATCCTTGGGGACGGGAAATCTTTCCTA
TTTTCCGAATCCTTCAGGAACTTTGAAAATTTTCTATCGATCTTTTCACC
TTGGTTGGGGTGGAAATCCCCCCAACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_o20.g1 MSMg01no354_o20.g1 CHROMAT_FILE:
MSMg01no354_o20.g1 PHD_FILE: MSMg01no354_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:14 2005
         (503 letters)



>mm_chr8_58931857_58932760
          Length = 904

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%), Gaps = 1/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttcagttcaaagcttggtttcctctttagtatcatttagctattaataaaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 436 catatttcagttcaaagcttggtttcctctttagtatcatttagctattaataaaggaac 377

                                                                       
Query: 61  gtaacagcagttggcccaggaaggaaagtggcaaagcatccatctcataagcctcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtaacagcagttggcccaggaaggaaagtggcaaagcatccatctcataagcctcatttc 317

                                                                       
Query: 121 tggagggaattatgaagcctgtatgattataactggaccttgaaatgggaaggagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tggagggaattatgaagcctgtatgattataactggaccttgaaatgggaaggagaacat 257

                                                                       
Query: 181 tagacaggg-aaaaaaaaaccaaacatgtaaatacgatgagacttaaagaggaaaatctt 239
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tagacagggaaaaaaaaaaccaaacatgtaaatacgatgagacttaaagaggaaaatctt 197

                                                                       
Query: 240 ctccattgtatggcttgggcttccttgtcaaaaatcaagtgtctataggtgtgtggcttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctccattgtatggcttgggcttccttgtcaaaaatcaagtgtctataggtgtgtggcttt 137

                                                                       
Query: 300 acttttgggtcttcagttctatttcactgatcaacctgtctgtcactgtaccaatagtgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 acttttgggtcttcagttctatttcactgatcaacctgtctgtcactgtaccaatagtgt 77

                                                                       
Query: 360 atggtttttatcactgtttctctgtagtacagtttgaggtcagggatagcggttttcgcc 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  atggtttttatcactatttctctgtagtacagtttgaggtcagggatagcggttttcgcc 17

                           
Query: 420 agacactcttttattg 435
           ||||||||||||||||
Sbjct: 16  agacactcttttattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)