BAC Information

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BAC

Clone NameMSMg01-355A23
Chromosome8 (Build37)
Map Location 83,334,537 - 83,334,972
singlet/doubletsinglet
Overlap geneGab1
Upstream geneLOC100039439, Hhip, LOC546075, Gypa, Frem3, Smarca5, LOC666237
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355A23.T7 (MSMg01no355_a23.b1)MSMg01-355A23.TJ (MSMg01no355_a23.g1)
ACCAG465538AG465539
length760763
length of high quality
(start - end)		556 (48 - 603)436 (77 - 512)
definitionCHROMAT_FILE: MSMg01no355_a23.b1 PHD_FILE: MSMg01no355_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:24 2005CHROMAT_FILE: MSMg01no355_a23.g1 PHD_FILE: MSMg01no355_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTCTGTAGATGAATTAGGGGAATTTTTGCCCCGTGGCTAC
TTTGCTATAATAAGCAACTCTGCCTGGAGGTAATGATGCTCAATATCTTC
TTTTAATTGTGAAGAGGCTATTGTCAGGAGTAGACATGTCTTGTAGTCAG
ATGATCTTTAATAATGAAGTAACATTAAATGCTATATTCTGTGAATTTCT
GATGCTTTTAAAGACTATCTATATAAAGTATATCTAAACTGTTAAACCTT
GACTAGTCTTAGCTATTTCTAATTGAATAATATTAAAAACATTTTATTAT
AATTCAGATATAAATCGGAATCTAATATAACCATGAGTTTACTATCTGGG
CCTTAACTTGTGTTACTTAATCATCCTAAACAGCTTGTAATAGCAGCTAG
AAGAACTGGGTCAAAGCCTTGTGTTCTTAAATGAGTTGCATAGGCACAAT
GCCTATCTAAGAGTAACAATATTAATTTCAAAGTTTTTATCAATATACAA
AGACTTATACTGATGAAAACCTTAAATCTGTATCAATATATAAATTCTGA
ACCAATGTAAGAAATTATAACTTCTATTTTGCATCAATGATAAAGATTTC
TATCAATGTAAGATTGTGGCTATACAAAGCTTTTGTCAAGAAATCCAACC
CAACTATTTTCTCCTTGTTCCAAATACAAACATTTTTCAAATAATTCTTA
TAACGACACN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTTCTTTGTGAAGAGGCTG
CTGTTCTGAGCTCTGCTTTGTACCTGGTGGCTGGCTTTGGTTGGATAAGG
TCAATTACTTTGTATGGTGCAGGAAGCAGTTCCTGAGCGGGTGACTCGAG
AGAGCATGATTTATCTCTTTGGAACTACTTTTCCCAAGGAAACTCATAAC
TGCCTCATACCTTTTGCCTGGAAGCCTTAAACTAAGTTGTACATTCAGAA
GAGAGTGGTATTGAGCGTCATCCAGACTTAGTTCATATTAATACCATTAT
GGCAATTTGTTTTGAAATGTTTTCAGTGATTCATATGAAAGTGATGTTTT
TGAACTGTGTCCCAATTTTTAAAATTATTTGTTTTTGTTTGTTTGTTTGT
TTCTATGGGTATGTTTGTGTGCCCAGTGCATGCATGCCCACCACATGTGC
AGGACCCCTCAGAGTTTAGAAGATGGCTTTCCCCTGGAGCTGGAGCTACA
GGTGATTATGAGCTACCATCTGGGTGCTAAGAACTGACCCCAAGTCCTCT
GCTATAACGGTGTGTGGCCTTGACTGACGACCACATCTCTGGCACCCCGG
ACCTCCTGGTTTTACTGGGGTCCTTTTCCCATTGTTGAATCCGCCCCAAA
CAAAAAAAAACCCTTTGTCGGGATGCCCGGTTTTTTTTTTTCGCTGGAAT
CTCCTTCATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_a23.g1 MSMg01no355_a23.g1 CHROMAT_FILE:
MSMg01no355_a23.g1 PHD_FILE: MSMg01no355_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:24 2005
         (436 letters)



>mm_chr8_83334425_83335260
          Length = 836

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttccttctttgtgaagaggctgctgttctgagctctgctttgtacctggtggctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acttccttctttgtgaagaggctgctgttctgagctctgctttgtacctggtggctggct 489

                                                                       
Query: 61  ttggttggataaggtcaattactttgtatggtgcaggaagcagttcctgagcgggtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttggttggataaggtcaattactttgtatggtgcaggaagcagttcctgagcgggtgact 429

                                                                       
Query: 121 cgagagagcatgatttatctctttggaactacttttcccaaggaaactcataactgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cgagagagcatgatttatctctttggaactacttttcccaaggaaactcataactgcctc 369

                                                                       
Query: 181 ataccttttgcctggaagccttaaactaagttgtacattcagaagagagtggtattgagc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 368 ataccttttgcctggaagccttaaactgagttgtacattcagaagagagtggtattgagc 309

                                                                       
Query: 241 gtcatccagacttagttcatattaataccattatggcaatttgttttgaaatgttttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtcatccagacttagttcatattaataccattatggcaatttgttttgaaatgttttcag 249

                                                                       
Query: 301 tgattcatatgaaagtgatgtttttgaactgtgtcccaatttttaaaattatttgttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgattcatatgaaagtgatgtttttgaactgtgtcccaatttttaaaattatttgttttt 189

                                                                       
Query: 361 gtttgtttgtttgtttctatgggtatgtttgtgtgcccagtgcatgcatgcccaccacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gtttgtttgtttgtttctatgggtatgtttgtgtgcccagtgcatgcatgcccaccacat 129

                           
Query: 421 gtgcaggacccctcag 436
           ||||||||||||||||
Sbjct: 128 gtgcaggacccctcag 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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