NTTGTGTCNNNNNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGGAATTCAAGGCCTCATACCTTAAACCATGGAT
TAAAAAGCCAATTCTAACCGGCCAAAACCCAATTTAAAACCCCCCAAACC
CTTTTCCCAAATAANNAAAAAATTTTTTGTTCCCCTTTNNNCCAAAAAAA
AAACTTTTGGGAAAACCCTCCCCCCTTAAAATACGGGAAAAAAAAAAAGG
GGGGGCCCCCTTTTTCCCCCTTTTTTTTTTAAAAAATAAATTTTGGGTCC
CCCTCCCCAAAAAAATTTTTCTTTAACAAAAGAAAAAAAAAACCCGGGGG
GGGCTTTTTTTTTTTTTGGGGGGGAGAAAAAACCCAAATTTTTATCTTTT
TTTTTTTTTTCTNANNTTATTTTTTACCTTTTTTTTTTTTGTTTGGTTGT
TCCCTTTTTTTTTTTTTTCCCCCCACCAAAAAATTTTATTTTTTTTTTTT
TTAATATAATACACACGCCCCTTTTTCCCCCCTTCTCTTCTCTTTATTAA
ATAAAAATATATTTCCCCTCCTCCTTCCCACAATTAAATATTCTTTTTTT
TTTTTTTTTTTTTTTTTATCAGAATTATTACAGTATGTAATNTTTTATTT
TTACGTAAGATAGCCCTGGTGGTTATTACTATTTTTNNTTCTTTTTNNCT
ATCCCCCCCCTCTCCTCCCCACNTACAACCATTACTATTCATATTTTATT
CTCTTTCTTTTTCCCTTGTTTTTTGGGTGTGCGTG

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTCTCTGCTCTCCTTGCATCTCAGTT
AGCTTCTCTAATGCAACCAGCTAAACACACCAAAGACAACACTGCCAGTG
CAAGTTTAATGATGCAGCCAGAGGTCTAAATGCTTGAAATGGGCATTATG
TCATCAGAATTGTGAGCTTCCCCTTTTATAGTTCTTTTACTCTTTCTCAT
CATTTTTGTTATTGTTGTTTTCTGGTTGTATATCCATCACAAGAACTCAA
ATTTCCTTTACAAAAGCTTGGGGAAATATTACCAATCCAGTTTGAATACC
TATTCACAACTCTGAACATAAAAAATACACAAGGTTCCTATGTCTAATCT
TATTCATTGTTTACTTCATTGCTCTTAGAATTGTTCAAGTATTATAAAAT
GCTAAAGTTCTGATAAATATCTAGCTGAAAAAAAAAGCTGCTGGATTATT
TAAAAATTTGAAATGTGTATTTATGATTATCAAAGTGCAAAGTTCTCATT
AAAGGTTAGATGCATAGCACTGCTTCCAAGAAGCAGAATATCCTAAGCAA
ACCCAATTATCAGCCATCTGTGCCTGTGATAACCCCCAATAGGAGCTTTT
TTCTCCCATTTACCCAGAACCCGTGACAAAAACCGCTGACCATAAAACAT
TCCGGGGTAAAGAATGCCTTCTTCTTTTTTTTTTTTACACAAAAATTTCG
GCCCCTTCCTGATTTAAAAG

Query= MSMg01no355_g10.g1 MSMg01no355_g10.g1 CHROMAT_FILE:
MSMg01no355_g10.g1 PHD_FILE: MSMg01no355_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:51 2005
         (473 letters)



>mm_chr8_52199061_52199934
          Length = 874

 Score =  847 bits (438), Expect = 0.0
 Identities = 465/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctctgctctccttgcatctcagttagcttctctaatgcaaccagctaaacacacca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctttctctgttctccttgcatctcagttagcttctctaatgcaaccagctaaacacacca 615

                                                                       
Query: 61  aagacaacactgccagtgcaagtttaatgatgcagccagaggtctaaatgcttgaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aagacaacactgccagtgcaagtttaatgatgcagccagaggtctaaatgcttgaaatgg 555

                                                                       
Query: 121 gcattatgtcatcagaattgtgagcttccccttttatagttcttttactctttctcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcattatgtcatcagaattgtgagcttccccttttatagttcttttactctttctcatca 495

                                                                       
Query: 181 tttttgttattgttgttttctggttgtatatccatcacaagaactcaaatttcctttaca 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 494 tttttgttattgttgttttctggttgtatatccatcacatgaactcaaatttcctttaca 435

                                                                       
Query: 241 aaagcttggggaaatattaccaatccagtttgaatacctattcacaactctgaacataaa 300
           |||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 434 aaagcaaggggaaatattaccaatccagtttgaatacctattcacaactctgaacacaaa 375

                                                                       
Query: 301 aaatacacaaggttcctatgtctaatcttattcattgtttacttcattgctcttagaatt 360
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aattacacaaggtttctatgtctaatcttattcattgtttacttcattgctcttagaatt 315

                                                                       
Query: 361 gttcaagtattataaaatgctaaagttctgataaatatctagctgaaaaaaaaa-gctgc 419
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 314 gttcaagtattataaaatgctaaagttctgataaatatctacctgaaaaaaaaaagctgc 255

                                                                 
Query: 420 tggattatttaaaaatttgaaatgtgtatttatgattatcaaagtgcaaagttc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tggattatttaaaaatttgaaatgtgtatttatgattatcaaagtgcaaagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space:   400032
Effective search space used:   400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)