BAC Information

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BAC

Clone NameMSMg01-355I21
Chromosome8 (Build37)
Map Location 101,852,386 - 101,852,851
singlet/doubletsinglet
Overlap geneCdh8
Upstream genenone
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355I21.T7 (MSMg01no355_i21.b1)MSMg01-355I21.TJ (MSMg01no355_i21.g1)
ACCAG465915AG465916
length745753
length of high quality
(start - end)
551 (49 - 599)466 (75 - 540)
definitionCHROMAT_FILE: MSMg01no355_i21.b1 PHD_FILE: MSMg01no355_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:02 2005CHROMAT_FILE: MSMg01no355_i21.g1 PHD_FILE: MSMg01no355_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTAATGCTTAAATTGTGCCTGTGAGCTCACTTCAGGGTCT
CTCTATCATGGTAATGGGAGATCCCAGCATGCTAGACTTTTGCAGAATAA
AACACTGCATTTACAAACTATTTGAGTCCTGGGTGTCATTCTTCAGTGAA
TCATTGACCCTTACATTGCCAAACTTGGTGACAGGAGTTCCATTCTCAGA
ACCCACATAGTGGAAGGCAAGAACTGAATTCTAAAAGTTGGACCTCCACA
CTCATCCTCTAACTGAGGAGTTAATTGGCATTGGATGGTCCCCTGGCTAC
TGGGTAAGGTGGAACATGGAAGAAGGGAGAAACTATTTCTTTTTAAATAT
ATGGTCCTGTGAGGTTGCCTATGTCAAAGTGGATTGCTCCATACCTATGC
ACATATGACAGTACAATCTAGATAAGTGAGATATAAATACTTACATGTGT
TTGTGTGTGTGTATGGGTGTACATATGTATATACATATGTACATATGTAT
AGTATGGTGCTATAAATGGATATATATGTATGTATATGCATACATATGTA
CATATACCCACATACACACACACTCTCACACTCCTATATATTACCTTAAT
TTTTGTTAAATAGAAAAATACTCCACTTTTGCTTTCTTTAATAAAGTCCC
CCTTATTTGTTGAATGGTAATGGAAACATTCTGTTGTACAGTAAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGAAAAGTGATTTATGGAAAATGA
AAAGGATGAGTTTTTGAAGTAGGCATGCCAGGACTTGAAGAGAGCTTCAA
AAATCTGTGCTTTCTCAAGCTTCTCCTTTCCCCACCGTTGATAGTGTAGA
AAACTGGGCGTAATACTTTCATTATATTAAGTGTTCAATACATAGTAGGT
TTATTCTAGAAAATATTTCTTAATACATTTATATTTTCCTTATTATAAAG
ATGAGATACAATTTAGAGAAAACAAAATTGGTTTGAAATGTAATTCCCCC
TAAGTAATTTATCAAGAAGACACAATCTATACAGCTATCTTCAGGTTTTA
TATCTCCACAATTTGACCTCTTAAAAACACACATTGAATTAAATTGCAAT
AGCCTATTGTATTGGTTCACATATAGACACAGAATTTATTGAAGACAAGA
GAAATGATTCAGTTAAGATAAAGAATTAAACTGTGTGGTCACTAAGACAT
GTTAAATGAAGTTCCCAACTCTCCAGTTTACTCAGTAGACTATTTTTCAG
TGACTGAAGCACTAATTTACTAAATATATTATTGATAACATGTTAAACTA
GCTCTCTATTTCTCTATGGCCAATGATTTANGCTTCCTAAAATCAGTATC
CTTTACAATTATTCCAATGACTTCCATCCCGTTTTTATTTTTTTTAACTG
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_i21.g1 MSMg01no355_i21.g1 CHROMAT_FILE:
MSMg01no355_i21.g1 PHD_FILE: MSMg01no355_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:02 2005
         (466 letters)



>mm_chr8_101852186_101853051
          Length = 866

 Score =  862 bits (446), Expect = 0.0
 Identities = 461/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaaaagtgatttatggaaaatgaaaaggatgagtttttgaagtaggcatgccaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaaaagtgatttatggaaaatgaaaaggatgagtttttgaagtaggcatgccaggac 260

                                                                       
Query: 61  ttgaagagagcttcaaaaatctgtgctttctcaagcttctcctttccccaccgttgatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagagagcttcaaaaatctgtgctttctcaagcttctcctttccccaccgttgatag 320

                                                                       
Query: 121 tgtagaaaactgggcgtaatactttcattatattaagtgttcaatacatagtaggtttat 180
           ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct: 321 tgtagaaaactgggcgtaacactttgattacattaagtgttcaatacatagtaggtttat 380

                                                                       
Query: 181 tctagaaaatatttcttaatacatttatattttccttattataaagatgagatacaattt 240
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 381 tctagaaaatatttcttaatacatttgtatttcccttattataaagatgagatacaattt 440

                                                                       
Query: 241 agagaaaacaaaattggtttgaaatgtaattccccctaagtaatttatcaagaagacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaaaacaaaattggtttgaaatgtaattccccctaagtaatttatcaagaagacaca 500

                                                                       
Query: 301 atctatacagctatcttcaggttttatatctccacaatttgacctcttaaaaacacacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctatacagctatcttcaggttttatatctccacaatttgacctcttaaaaacacacat 560

                                                                       
Query: 361 tgaattaaattgcaatagcctattgtattggttcacatatagacacagaatttattgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaattaaattgcaatagcctattgtattggttcacatatagacacagaatttattgaag 620

                                                         
Query: 421 acaagagaaatgattcagttaagataaagaattaaactgtgtggtc 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaagagaaatgattcagttaagataaagaattaaactgtgtggtc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)