BAC Information

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BAC

Clone NameMSMg01-355K04
Chromosome8 (Build37)
Map Location 73,666,815 - 73,667,382
singlet/doubletsinglet
Overlap geneLOC665858
Upstream gene2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057
Downstream geneLOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355K04.T7 (MSMg01no355_k04.b1)MSMg01-355K04.TJ (MSMg01no355_k04.g1)
ACCAG465976AG465977
length762764
length of high quality
(start - end)		570 (44 - 613)447 (72 - 518)
definitionCHROMAT_FILE: MSMg01no355_k04.b1 PHD_FILE: MSMg01no355_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:08 2005CHROMAT_FILE: MSMg01no355_k04.g1 PHD_FILE: MSMg01no355_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACGTTTTGTCTAGTCTTGTTGGCCCATGGATTGCATCCCAGAACTT
GGGAAGGAGGACATGAACAGATTTCTGTGAGTTAAGGCCAACATGCTCCA
TAGAGCAGTTTTCAGACCAGCATGGATACATAGTGAGATCCTGATTCAAA
AAAATGTTGTTTGTAAACATCTAAAGTAAGATACAGAAGGGACACAAATA
TAAAGTACTTAAAACACTTGCTAAATATTTTTCTTATGAATAGCACAATA
ATGCTAACTTTAAAATCTATGTCATAGTACTGGATCGTCAGCTCAGAGAA
CTGAAGTGAAGCATGTCAGGTTCAATGAAGGTAAGGTTTTTATAGTGAAT
ATAAATATGGTATATAGTAGCCAGTCCTATTACCCTAAAGAAGAGTAGAG
ATTAAGCTTCTTTCCCACTGATTCCAGAAAAGGCAGCTCAACTAGCAGAA
AGGAATCCAAATGCAGACAACAGTGTGAAGCGGTCCTCCCTTCAGTTTAT
AGAGAACCCACATGAAGACCAAGCTGCACATCTGCTACATATGGGGAGGG
GGTCTATGTGCAGCCCATGCATGCTCTTTGATTGGTGGTTCAATCTCTGT
GAGCCCTCATGGGTCCAGGTTACTTGATTGCGTAGGTTTTCTTGTGGTGT
CCCTGAACCCTCAGTCACAATGTTCTCCTTTTGATTTTCATGCCCTTCCC
CGATTCTTCCAC

GACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACAGAGGAATCTCAGAAGTTTGAGAAAC
ACCTGAATGTTCAAAGTCTTCAGTCCTCAGTGAAATGAAAATCAGAAGGA
CTTGAAGAATCCACCTTACACCAGTCAGAATGGCTAAAATCAAAACCTGG
AGTGACAGCACAAGCTGGTAAGAATATTGGGTAAGGGGAACACTCTTCTA
TTGCTGGTGGGAGGGCACATGTTTACAACCTTTTTTGAAAAGTAATTTGG
GGGACACCCCCAAGGAACCACACAGGATTCCCCATGGGATCCTAAGACCT
CTGGTGAGTGGAACACAGTGTCTGCTCCAATCCAATCGCTCGGGACCTGA
GACTGCATTAATTAAGGAAGGAGATAACCCGGCCTGATCAGGGGCACAAG
TCCCTTCCGGTTCACTCCAGCAGTGGAGTTCCTTGTGCGCGGAGTTTCTG
GACACCCCCAAGGTCCTCAGAGGACCCTCCATGGGATCTTAAGACTTCTG
ATGAGTGGAACACTACTCCTGCCAGGAGGTAGTTTCGAACACCAGATATC
TGGACACCTGCAATGCCAGAGGATAACTTGCCTGCATAGAGTACTCTGTA
CCCTGAATCTAAGGATAGAGATATGCCCCCAGATCCGCCGATAGAGGCTA
AAATAATCCCCGAAGAACCAGCTTTAATCTGAAGAAACTATTACCACCAA
TTTCCACATTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_k04.b1 MSMg01no355_k04.b1 CHROMAT_FILE:
MSMg01no355_k04.b1 PHD_FILE: MSMg01no355_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:08 2005
         (570 letters)



>mm_chr8_73666613_73667582
          Length = 970

 Score =  857 bits (443), Expect = 0.0
 Identities = 537/569 (94%), Gaps = 3/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaacgttttgtctagtcttgttggcccatggattgcatcccagaacttgggaag 63
           |||||||||  |||||||||||| ||||| |||||| |||  |||||||||||||| |||
Sbjct: 203 ggaattcaaaattttgtctagtcctgttgacccatgcattttatcccagaacttggaaag 262

                                                                       
Query: 64  gaggacatgaacagatttctgtgagttaaggccaacatgctccatagagcagttttcaga 123
            ||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 263 taggacataaacatttttctgtgagttaaggccaa-atgctccatagagcagttttcaaa 321

                                                                       
Query: 124 ccagcatggatacatagtgagatcctgattcaaaaaa--atgttgtttgtaaacatctaa 181
           |||||||||||||||||||||||||||||| ||||||  || ||||||||||||||||||
Sbjct: 322 ccagcatggatacatagtgagatcctgatttaaaaaaatatattgtttgtaaacatctaa 381

                                                                       
Query: 182 agtaagatacagaagggacacaaatataaagtacttaaaacacttgctaaatatttttct 241
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 agtaagatacagaagagacacaaatataaagtacttaaaacacttgctaaatgtttttct 441

                                                                       
Query: 242 tatgaatagcacaataatgctaactttaaaatctatgtcatagtactggatcgtcagctc 301
           ||||| |||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 442 tatgactagcacaataatgctaactttaaaatctatgtcacagcactggatcatcagctc 501

                                                                       
Query: 302 agagaactgaagtgaagcatgtcaggttcaatgaaggtaaggtttttatagtgaatataa 361
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 502 agagaactgaagtgaagcatgtcaggtttaacgaaggtaaggtttttatagtgaatataa 561

                                                                       
Query: 362 atatggtatatagtagccagtcctattaccctaaagaagagtagagattaagcttctttc 421
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 562 atatggtatatagtagccagtcctattaccctaaataagagtagagattaagctcctttc 621

                                                                       
Query: 422 ccactgattccagaaaaggcagctcaactagcagaaaggaatccaaatgcagacaacagt 481
           ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 622 ccactgagtccagacaaggcagctcaactagcagacaggaatccaaatgcagacaacagt 681

                                                                       
Query: 482 gtgaagcggtcctcccttcagtttatagagaacccacatgaagaccaagctgcacatctg 541
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtgaagctgtcctcccttcagtttatagagaacccacatgaagaccaagctgcacatctg 741

                                        
Query: 542 ctacatatggggagggggtctatgtgcag 570
           |||||||||||||||||||||||||||||
Sbjct: 742 ctacatatggggagggggtctatgtgcag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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