BAC Information

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BAC

Clone NameMSMg01-356M06
Chromosome8 (Build37)
Map Location 76,144,727 - 76,145,109
singlet/doubletsinglet
Overlap genenone
Upstream geneNwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
Downstream geneCrry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356M06.T7 (MSMg01no356_m06.b1)MSMg01-356M06.TJ (MSMg01no356_m06.g1)
ACCAG466829AG466830
length214776
length of high quality
(start - end)
---386 (71 - 456)
definitionCHROMAT_FILE: MSMg01no356_m06.b1 PHD_FILE: MSMg01no356_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:35 2005CHROMAT_FILE: MSMg01no356_m06.g1 PHD_FILE: MSMg01no356_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCGAGGACTAAACACCGTTACCATAACCAAGTCTCGCCCCCCCGTTAC
TCACTCTAACCCACTTTACCCATAGCAAACCCCCCCCAACACCAACCACC
CTCCCCAAAAAAAACCCTCCTCCNCTCAACNNNNNAAGGTAGTGGGGGNA
GNNTNNAAGAAATGGAGGGGCCAATTGGGCTAGATCAAAGGTCGTACGCG
ATTCATGGCTATCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTTCCTTCCCATGCTTCTGTTTGCCCAT
CTCTTAAACCAATTTTTCCTTTGACTTTTGTGGGGTTTGTAAACTTTCTT
TACTTTCTTTGATTCTTTTTATTTTAAAATTATTTCTTGAGTTTATAATA
TAATTACACCATTTTCTTCTTTTCTTTTGTCCTTCCACCGCCACCTGCAT
ACCCCTCCTTGCCCTCATTCAAATTCAAACTCTTTATTCATCAATTGTCA
TTATATACATATTAGTATATACATATATATTTCTAGATATATAAATTTAA
TCTTTACAGAAATTTATTTTTAGGAGCGAGATGTAATTTTTATTTAGTTT
TTGTATTTTACTTTAAGTTCTTATAATACAGCCCTGGTTGTCTTACAACT
CTCCATATAGACCAAGTTTGTTCGAACTTGCCGCAATTTTCTTGTTTCTG
ACTCCCCGATACCCCTATATTTTATTTACTACCATATGACTCTATTTCCG
CTTGTATCCTTACTTTTTTTATCTATGCCAGTCCATGTTGGTCACATTTT
CCTTTTTCTTTTTTCTTCTATTCCCCACCATCTTTTTCTCCTCTTATTTT
CCCATTTCTTCTTATACTCTACTTACTCGTCTTTCCAGTTATCTAACTAT
TCTTTTTTCGCTTTTTTTTCCCCTCTTCCTTTATCCATTTTTTCGCATCC
CCTTTATATTCCCTCCTCACTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_m06.g1 MSMg01no356_m06.g1 CHROMAT_FILE:
MSMg01no356_m06.g1 PHD_FILE: MSMg01no356_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:35 2005
         (386 letters)



>mm_chr8_76144527_76145312
          Length = 786

 Score =  702 bits (363), Expect = 0.0
 Identities = 378/383 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttccttcccatgcttctgtttgcccatctcttaaaccaatttttcctttgacttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttccttcccatgcttctgtttgcccatctcttaaaccaatttttcctttgacttttg 260

                                                                       
Query: 61  tggggtttgtaaactttctttactttctttgattctttttattttaaaattatttcttga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtttgtgaactttctttactttctttgattctttttattttaaaattatttcttga 320

                                                                       
Query: 121 gtttataatataattacaccattttcttcttttcttttgtccttccaccgccacctgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttataatataattacaccattttcttcttttcttttgtccttccaccgccacctgcat 380

                                                                       
Query: 181 acccctccttgccctcattcaaattcaaactctttattcatcaattgtcattatatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccctccttgccctcattcaaattcaaactctttattcatcaattgtcattatatacat 440

                                                                       
Query: 241 attagtatatacatatatatttctagatatataaatttaatctttacagaaatttatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagtatatacatatatatttctagatatataaatttaatctttacagaaatttatttt 500

                                                                       
Query: 301 taggagcgagatgtaatttttatttagtttttgtattttactttaagttcttataataca 360
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 taggagtgagatgtaatttttatttagtttttgtattttactttaagttcttataatata 560

                                  
Query: 361 gccctggttgtcttacaactctc 383
           |||||||||| |||| |||||||
Sbjct: 561 gccctggttggcttagaactctc 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)