ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAGGTCCACAGAGACCAGAAGAGGTCACTGAATCTCTTGGAGCTAG
AATTATAGGTTGTTATAAAATGCCTGACATGAGAACTGGGAACAAATTTT
GGATTTTCTAGAAGGCAATAGATGCCCTTAACCAGGTCCCTTTCTTTCTT
TCTGGTCCCTTAATTATCTTTCTGGTCCCTTAATTATCTCTGGCTACTTA
GACACAATAGATGTGAAAGCCTAAATGCAATTAAATTTAAGATATACAAT
TTGGTTCTTTATGATAGTTGGCATTTTCTGTATAAAAGTTTTTGGAATGT
TTCCTATGTTAGGTTCTTTTGATCTTCACATCAACTCTATGAAGTGGACA
TACTCAGTATTTGTACCTTGTATTTTATGATAATGCAATGATGTTCAAAA
AGGCTGCATGGCATCACTACAAAGTGGGCAGAGAGGTTAGAATCAGGGCC
TTAATCACACAATGATCACACATCATGTTCAAACCAAGGANAGACCAATA
AAACAATACAAACTAGAATTAAGGTTTGGTTGGTTGGCAGGAGAAAGTTT
GATCCCTTAAAAAATCCGGGGATTTGAAAAACCAAGGGGTTTCTTTAACA
GGAGCCATTTAATTGAGGGAGGACTTAATCTGGCCCAAAAGAGGCTTTAT
TGGCCTCCAAAAAACTTTATAAAATATAAACCCCGCCAGAAGTTTCCTTA
AACTTGTTGCCGGTTTTTGGGAAACCACTAAN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGTGAGGCTGGGGCAAGAGAATTGCTA
ATCTTGTTAGGGATATTTCTCTGAGAACAGCTAATATTATTTTGGCAGCT
TGTAGGCTCAGTCATTTTGACCGCTAAAACTATGTTTTTACATTTGTTTA
GTCAGCCAGCTTCCTTATCTGGCTCTACACTTGGCCTGGTACTACAGTTA
GGACAGTCCTTTTCGAAGAAGGAAGGTACTGGGTGGTCTTGAATTCATTT
TAGATATTACACTAGCAACCTGCAACTCCAGTTTCAGTAGATCTTGAACC
TTATTCTGGCCTCCAAAGGCACTGCACATACACACATCCAAACAACCACA
TAAGTTAAAAGAATAAAGAATCATATATTCTACGTAGAGTTCAATTATTC
GTTTTTCCTTTTGAAATAAAGTCTTGCTTTTTTGCCCAAACTAAGTTTGA
ATGTCTGGGCTTGGAGAACATTTTGTTACTGCCTCTTGAGTATATGGGAC
TATAGAAGGCTGTCACCACCCCAAAATAAATGAAATTGTTTTAAAGAAAA
AGTGGTCCTAAAAGTTTTAACAAATTTTCTTAATTCCCAATGGTTTGGGC
GGGAATTTTGCCCTCCACTTTTGTGCGGACAGGGCCCTTGGTTTTTTTTC
TTGTTCTTTCCCAAAAGCCATTCCCTTTTCCCCCTCTGGGTCTGGTCCTT
CCTTTTATAATTAGTCTGGTTTTTTTCCTAAATTTAC

Query= MSMg01no357_i24.b1 MSMg01no357_i24.b1 CHROMAT_FILE:
MSMg01no357_i24.b1 PHD_FILE: MSMg01no357_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:35 2005
         (446 letters)



>mm_chr8_54634194_54635039
          Length = 846

 Score =  731 bits (378), Expect = 0.0
 Identities = 415/442 (93%), Gaps = 24/442 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggtccacagagaccagaagaggtcactgaatctcttggagctagaattata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gaattcaaaggtccacagagaccagaagaggtcactgaatctcttggagctagaattata 288

                                                                       
Query: 65  ggttgttataaaatgcctgacatgagaactgggaacaaattttggattttctagaaggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggttgttataaaatgcctgacatgagaactgggaacaaattttggattttctagaaggca 348

                                                                       
Query: 125 atagatgcccttaaccaggtccctttctttctttctggtcccttaattatctttctggtc 184
           ||||||||||||||||||                 ||       ||  ||||||||||||
Sbjct: 349 atagatgcccttaaccag-----------------tg-------aacaatctttctggtc 384

                                                                       
Query: 185 ccttaattatctctggctacttagacacaatagatgtgaaagcctaaatgcaattaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttaattatctctggctacttagacacaatagatgtgaaagcctaaatgcaattaaatt 444

                                                                       
Query: 245 taagatatacaatttggttctttatgatagttggcattttctgtataaaagtttttggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagatatacaatttggttctttatgatagttggcattttctgtataaaagtttttggaa 504

                                                                       
Query: 305 tgtttcctatgttaggttcttttgatcttcacatcaactctatgaagtggacatactcag 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtttcctacgttaggttcttttgatcttcacatcaactctatgaagtggacatactcag 564

                                                                       
Query: 365 tatttgtaccttgtattttatgataatgcaatgatgttcaaaaaggctgcatggcatcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatttgtaccttgtattttatgataatgcaatgatgttcaaaaaggctgcatggcatcac 624

                                 
Query: 425 tacaaagtgggcagagaggtta 446
           ||||||||||||||||||||||
Sbjct: 625 tacaaagtgggcagagaggtta 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)