BAC Information

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BAC

Clone NameMSMg01-359F13
Chromosome8 (Build37)
Map Location 120,447,423 - 120,619,270
singlet/doubletdoublet
Overlap genenone
Upstream gene2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F13.T7 (MSMg01no359_f13.b1)MSMg01-359F13.TJ (MSMg01no359_f13.g1)
ACCAG468782AG468783
length767761
length of high quality
(start - end)		417 (27 - 443)393 (57 - 449)
definitionCHROMAT_FILE: MSMg01no359_f13.b1 PHD_FILE: MSMg01no359_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:49 2005CHROMAT_FILE: MSMg01no359_f13.g1 PHD_FILE: MSMg01no359_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,447,423 - 120,447,829)(120,618,881 - 120,619,270)
sequence
CTATACGACTCNTTATTCGCGAGAGGACCGCGGAANTCTCTCCTGCCATG
CTAGGTTTCTACAAGAGCAAACTTAGCAGTGCTGTGAATCTGGCTGAGTT
CCAACAATGCTCCCTGGTGTGTCCCTTCCATTTGGAATCATAGATATTTA
CCTCTTATCTGAGTCTTTGCACCCCTCCTCAAGCTTGCCCATGTCATTAT
GAAGACTTCCTGTGTTGCTGCCTTGTCACTGAGATAGACTACTTGACAGA
ACCACCTTAAGGGAGGGAGGATTGACTTTTGGCTCCTGGCTTAAAGGGAG
GTAGCTTGTGGCATAGCTTGCTCATATTGTTCAAGGAAAGACCTTGGGAC
AGAATGAGAAGTCAATGCCATAAGGTCTCCCGCCCGCTACACCCTTCTAC
TAGTTACAGCATAGTTCTACAGATTTCAGAACCTCTCAAACAAAGCCATT
ATCTGGGGACCCAGTGTTCCTACACAGGAGCCTATGGGAAGCTTATCTGG
GGGGTGGGTGGGCTTTCCCATTTAAATCCCTATATTTTTTCCCCCCCCTC
CAATTCTACCATTAAATTTGTTTCTTTTCCCGAACTACTTTTTACCCCCC
CCCTTTCTTTTTTTTTCCCTCTTGTCTTTCACATATCTTTTTTTTGACCC
TAATTTTTTCTCCCCAATATTGAATATCCCATCTTTCCTCAATTTTTTTT
TATATCCCATTCATATATACCATTATTCTCTTCATACACTCTCCCCCTTT
TCCCCCCCCTCTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAAGGCAGTCTATAAACTTTCGGGGAACACCTGCTCAGAATGGG
AAATGAGTAGTCGATCACTCAGAATGCAGAGGTGCACAAACGCGAGACGT
GCTAAAGACATTAGTCATTGGAGAGATGCAAAGTACATGCGCAATGAGAC
ATTAAACCAGCCAAGTCTAGGAAGACTCCAACGCCAGGTTTCTTCATTAC
TTTTCTCATTGCTGTGACAAAGTAGCTGACAACAACAGCTAAAGGTAGAG
CTTATTCTAGTTCACATTTGAGAGTCTGGTCCATCTCAGCCAGGAAGGTA
CAGTGACACAAGAGGCCCTTGGCTGTGACAGCAAGGACACAAAGCAGCTA
GTCACACCGTGTCTAGGGAAGTAGCAAGAGCTTAAAGCTGATTCTCAGCT
TGTAGCCTCTGCGTGAGGGAGTGTGCATGAACATGCGTGTACCTGTGCAT
GTGTGTGTGCTTTGTGTGTTCCGCCTGTATACGATCTGTCTGTGCGTGCT
TTTTTTCCCCTTGTCTCTTTTTTTTTTTTTCCCCCCTCACTCCTTTCTAT
TCTTTTTTCTTTCTCCCCCCTTTTTTTTCCCTTTTCTTTTCCTGCCTTCC
TCCCTCCTCTTTTTTCTTTTTTTCCCCCTTTCTCTTCTTCTTTTTTTCCT
CATTCCCTTCCTCTCCTTTTTTTCATATACCCCCTATTATCCTTTCTCCT
TTCCCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f13.b1 MSMg01no359_f13.b1 CHROMAT_FILE:
MSMg01no359_f13.b1 PHD_FILE: MSMg01no359_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:49 2005
         (417 letters)



>mm_chr8_120447213_120448029
          Length = 817

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  tctctcctgccatgctaggtttctacaagagcaaacttagcagtgctgtgaatctggctg 70
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tctctcctggtatgctaggtttctacaagagcaaacttagcagtgctgtgaatctggctg 270

                                                                       
Query: 71  agttccaacaatgctccctggtgtgtcccttccatttggaatcatagatatttacctctt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agttccaacaatgctccctggtgtgtcccttccatttggaatcatagatatttacctctt 330

                                                                       
Query: 131 atctgagtctttgcacccctcctcaagcttgcccatgtcattatgaagacttcctgtgtt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atctgagtctttgcacccctcctcaagcttgcccatgtcattatgaagacttcctgtgtt 390

                                                                       
Query: 191 gctgccttgtcactgagatagactacttgacagaaccaccttaagggagggaggattgac 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gctgccttgtcactgagatagactacttgacagaaccaccttaagggagggaggattgac 450

                                                                       
Query: 251 ttttggctcctggcttaaagggaggtagcttgtggcatagcttgctcatattgttcaagg 310
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 451 ttttggctcctggcttaaagggagggagcttgtggcatagcttgctcatattgttcaagg 510

                                                                       
Query: 311 aaagaccttgggacagaatgagaagtcaatgccataaggtctcccgcccgctacaccctt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaagaccttgggacagaatgagaagtcaatgccataaggtctcccgcccgctacaccctt 570

                                                          
Query: 371 ctactagttacagcatagttctacagatttcagaacctctcaaacaa 417
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctactagttacagcatagttctacagatttcagaacctctcaaacaa 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_f13.g1 MSMg01no359_f13.g1 CHROMAT_FILE:
MSMg01no359_f13.g1 PHD_FILE: MSMg01no359_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:49 2005
         (393 letters)



>mm_chr8_120618881_120619673
          Length = 793

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggcagtctataaactttcggggaacacctgctcagaatgggaaatgagtagtcgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaaggcagtctataaactttcggggaacacctgctcagaatgggaaatgagtagtcgatc 331

                                                                       
Query: 61  actcagaatgcagaggtgcacaaacgcgagacgtgctaaagacattagtcattggagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 actcagaatgcagaggtgcacaaacgcgagacgtgctaaagacattagtcattggagaga 271

                                                                       
Query: 121 tgcaaagtacatgcgcaatgagacattaaaccagccaagtctaggaagactccaacgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgcaaagtacatgcgcaatgagacattaaaccagccaagtctaggaagactccaacgcca 211

                                                                       
Query: 181 ggtttcttcattacttttctcattgctgtgacaaagtagctgacaacaacagctaaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggtttcttcattacttttctcattgctgtgacaaagtagctgacaacaacagctaaaggt 151

                                                                       
Query: 241 agagcttattctagttcacatttgagagtctggtccatctcagccaggaaggtacagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agagcttattctagttcacatttgagagtctggtccatctcagccaggaaggtacagtga 91

                                                                       
Query: 301 cacaagaggcccttggctgtgacagcaaggacacaaagcagctagtcacaccgtgtctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  cacaagaggcccttggctgtgacagcaaggacacaaagcagctagtcacaccgtgtctag 31

                                         
Query: 361 ggaagtagcaagagcttaaagctgattctc 390
           ||||||||||||||||||||||||||||||
Sbjct: 30  ggaagtagcaagagcttaaagctgattctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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