BAC Information

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BAC

Clone NameMSMg01-359P15
Chromosome8 (Build37)
Map Location 39,530,879 - 39,697,426
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621149, Sgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359P15.T7 (MSMg01no359_p15.b1)MSMg01-359P15.TJ (MSMg01no359_p15.g1)
ACCAG469263AG469264
length745782
length of high quality
(start - end)		493 (44 - 536)338 (55 - 392)
definitionCHROMAT_FILE: MSMg01no359_p15.b1 PHD_FILE: MSMg01no359_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:36 2005CHROMAT_FILE: MSMg01no359_p15.g1 PHD_FILE: MSMg01no359_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,696,934 - 39,697,426)(39,530,879 - 39,531,215)
sequence
ACGACTCCTATACCGAGAGGATCCGCGGAATTCTCAATAAAATACTAGGA
AACTGAATACAGGCTCATGAAGATCACCCTCTACTTACTGTGTTGACTGA
TGTGTTTAGTAGCTTTAACTTTCTTACTTTTTAAATACTTGGAAGCACCA
GTAGTCTTTCCTTCCCTCTGCCCTCTTAAGCTTGGTGTTATTTTGGCGAT
GTGCTTCCTGTCCCTTCATTCTTGACAGTGTCACTTTTCCTTTAAACTTT
CTGTTCTCTGAAGGATTAAATTAAATTAAATCCCTATTAAGTCCTTATTA
GATATTTGTCTTATTGGAGGAACCTATTTAGCCGATATTTTTCTCCTAGC
ACTCATTCTAATTCTTATTTCTTTCCATACACTGAAGACAAATGCATATT
TCTGAAGTGCGATCTAATTATGCCATCTTAAATAAAATCTTAGCTGACTC
TTTTATTGGTAAGAAGTCTCTTCAGTCACTCATTAGACTCCCCCTGATGT
ACAAGCAGTCTACCATCTGATTCTTATTTTTCTCCTCAAACGTACCCTGT
GCTCCAGCTTAATTGGATCATGTCCCACCTTCCTGAAATGTTGAACCCTC
ACCTTGTACCCTTTTCTGAAACCCCTTATTATCCCTGACTGTTTTTCTAA
TCCACCCCTATACATGGAACCCATGTCTCCCCTCCGTAAAAATTCTCCTT
TTGGACCTCCTTAACACTATCCCAATTTTTCCCCCCCTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTATATTGCTCAGATATGAAATATAGGAAGTAAAAGGACTGGTGCC
AAAACTCTTGGATGTCAAGTAATATATTAAAATGTTTGTCATCTTAAGAA
TTATTAATTTTAAATATTATATTTAATATTCACAACAGTGCCATATCCTG
GCCCTAGGAATATAGTCAGAAGAGGTTATGAGGTGACAATGATGTCAAGC
AAAGCTTTGCATTAGGTAGTCTAATGAAATGAAATTACTCAGATTACTTG
ATTTACCTTGCTAGTATTTAATTTACGTTTTTTTATATATACCCTATGAT
AGAAAGCAAATATTTTTCGACATCCTACAATTTTCCAATTTCCCCAACCA
GTGCCGTTGTATAAGACAAAAGAGTTCTAATTTTTCAATGATAAGGAGAT
TCTGTTATAACTAGGAAGTAGTTATTTTCCAGAATGTAAAATAATAATAA
CCACTGATAGAGATTTAAAACCATTCACAACAATTCACCCTCTCCTAATA
AACCAAAATTTAAATCTCCATTAAAAAATTAGGATAAAAAAAGAACCGTA
GACAAAATCCGGTTTTGTTTTTATCCGAAACCCGGGATTGGTTCCCCTCA
ACCGGAGAAAACCTTTCCTCTTTCAATCATTGTTACAAGCGCCCACGCAA
TCGGTACATATATTATTTCCTTTTCCCGTCCCCCTGGTGATTTTAATAGT
GTACGGTATTTGCCCCTCCATTTCACTCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_p15.b1 MSMg01no359_p15.b1 CHROMAT_FILE:
MSMg01no359_p15.b1 PHD_FILE: MSMg01no359_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:36 2005
         (493 letters)



>mm_chr8_39696734_39697626
          Length = 893

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaggaaactgaatacaggctcatgaagatcaccctctacttactgtgttgactgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actaggaaactgaatacaggctcatgaagatcaccctctacttactgtgttgactgatgt 634

                                                                       
Query: 61  gtttagtagctttaactttcttactttttaaatacttggaagcaccagtagtctttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtttagtagctttaactttcttactttttaaatacttggaagcaccagtagtctttcctt 574

                                                                       
Query: 121 ccctctgccctcttaagcttggtgttattttggcgatgtgcttcctgtcccttcattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccctctgccctcttaagcttggtgttattttggcgatgtgcttcctgtcccttcattctt 514

                                                                       
Query: 181 gacagtgtcacttttcctttaaactttctgttctctgaaggattaaattaaattaaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gacagtgtcacttttcctttaaactttctgttctctgaaggattaaattaaattaaatcc 454

                                                                       
Query: 241 ctattaagtccttattagatatttgtcttattggaggaacctatttagccgatatttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctattaagtccttattagatatttgtcttattggaggaacctatttagccgatatttttc 394

                                                                       
Query: 301 tcctagcactcattctaattcttatttctttccatacactgaagacaaatgcatatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcctagcactcattctaattcttatttctttccatacactgaagacaaatgcatatttct 334

                                                                       
Query: 361 gaagtgcgatctaattatgccatcttaaataaaatcttagctgactcttttattggtaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaagtgcgatctaattatgccatcttaaataaaatcttagctgactcttttattggtaag 274

                                                                       
Query: 421 aagtctcttcagtcactcattagactccccctgatgtacaagcagtctaccatctgattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aagtctcttcagtcactcattagactccccctgatgtacaagcagtctaccatctgattc 214

                        
Query: 481 ttatttttctcct 493
           |||||||||||||
Sbjct: 213 ttatttttctcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_p15.g1 MSMg01no359_p15.g1 CHROMAT_FILE:
MSMg01no359_p15.g1 PHD_FILE: MSMg01no359_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:36 2005
         (338 letters)



>mm_chr8_39530679_39531416
          Length = 738

 Score =  652 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatattgctcagatatgaaatataggaagtaaaaggactggtgccaaaactcttggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatattgctcagatatgaaatataggaagtaaaaggactggtgccaaaactcttggatg 260

                                                                       
Query: 61  tcaagtaatatattaaaatgtttgtcatcttaagaattattaattttaaatattatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagtaatatattaaaatgtttgtcatcttaagaattattaattttaaatattatattt 320

                                                                       
Query: 121 aatattcacaacagtgccatatcctggccctaggaatatagtcagaagaggttatgaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattcacaacagtgccatatcctggccctaggaatatagtcagaagaggttatgaggt 380

                                                                       
Query: 181 gacaatgatgtcaagcaaagctttgcattaggtagtctaatgaaatgaaattactcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaatgatgtcaagcaaagctttgcattaggtagtctaatgaaatgaaattactcagat 440

                                                                       
Query: 241 tacttgatttaccttgctagtatttaatttacgtttttttatatataccctatgatagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttgatttaccttgctagtatttaatttacgtttttttatatataccctatgatagaa 500

                                                
Query: 301 agcaaatatttttcgacatcctacaattttccaattt 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaaatatttttcgacatcctacaattttccaattt 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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