BAC Information

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BAC

Clone NameMSMg01-360B08
Chromosome8 (Build37)
Map Location 14,011,813 - 14,154,377
singlet/doubletdoublet
Overlap geneErich1, Dlgap2, LOC100041140
Upstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036
Downstream geneC030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360B08.T7 (MSMg01no360_b08.b1)MSMg01-360B08.TJ (MSMg01no360_b08.g1)
ACCAG469344AG469345
length747773
length of high quality
(start - end)		464 (47 - 510)353 (78 - 430)
definitionCHROMAT_FILE: MSMg01no360_b08.b1 PHD_FILE: MSMg01no360_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:44 2005CHROMAT_FILE: MSMg01no360_b08.g1 PHD_FILE: MSMg01no360_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,153,920 - 14,154,377)(14,011,813 - 14,012,161)
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCATCAGGATCTGCCAACAGAAATCGTGTTGGACGCTGGGAGAC
CTGCTTCCCTCCATTGTAGGTGGTGACATGCTTAAATGCATAACTGTATG
ACTGACAAAACTTAGTGAACTGACATTTGATATATGATCACTTTATATTA
AATTGTTCCAACAGAAACTTGAAAGTGGTATTAGATGTTCTGACATATTC
CTCTTTCTAAGATGGTATCCACAGGCTGACTTTGGGAACTCAGACGGCCA
CTGTGATAGTCTAGTGCATCTTGGTACGTGTTTGCCGAGGAAAATAATAG
GGGCACAGCACTGACTATCACAACCTCTCAAGGGAAGAAACATGGTCCTA
TGAGACTGCTGTTCAGAGGTAATCCATCCATCCATCCCTTGTCTAATAGG
TGAGCACCAGAGAGACACGGCCGCTATCCAGCAAGACTACCAGTGGTACT
AGGACTGGGCTGGAGAAGGATGCCAGACAGGGAACAACATCAGCTGGTAG
CTTTAAAAGAATTTGCTGACTGGTGGGAAGGATCTGCTGAACAGCAGACA
GGACTTTACCTATATTGACACCAATCAGACATATGTCCCCAGACGCCCAA
TGAAGTAAGCATCTGTCGAGATTATGAATTGCTGATATGTGAACTTCTTC
CTTTCCTTCCCCAGAGAAAGCATTTCTTTTTTACAATAAGCCCTAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACCAATAGGCTGGAGGGGTTG
GACCTGGAGAGAAGCTGGTGGACAAAGCAACCATTTGATACAATGAGCTG
ATGTCTTGCTACATTTTCTTAGACTGTTCTCTCACAGTGAGCTGTTGGCA
CACAGATAGTGGGTAGTTGTTGCACTGGCTAGATATGACCCTGGCAACAG
TTATCTCCTGCTTAAGGAGAGTGGAGGCCACTGCAGATGAATATCTGAGC
TGCAAGAACCAAAACTTGGCTGGGCGGTGGTGGTGCATGCCTTTAATCCC
AGCACTTGAGGTGGAGGTGAAGGGGGTAAGAAGGAAGCATAGGCAGGTGG
ATCTCGATGAGTTTGTGGCCAGCCTGTTTTGCATAATAAGTAGCAGGACA
ACCAGGTTTACACTCACACACTCACACTCATATTCATTCACGCTTTCTCA
CCCCCACGTCTTATATTAATCTTCAACCTTCTACTAATCTTCCCATCATT
TTTAGTGCGTTTTACGCCCTCCACCATTATTTATTTCCCCTTTCCCTTAA
CTTAAATAATATATTCGCTATTTCCCGCCTTCTCGATTCTTCCTTTTTGT
TTCTCCTTATATTCTAATTTTCCCTTATTATCTTCACTTTTCTTACTTTT
CTCCCTCCCCTTTCCACTATTTGCCTTATTCCTTTATTCCCTTTTTTATC
TCTTTTTCACATTCCTATTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_b08.b1 MSMg01no360_b08.b1 CHROMAT_FILE:
MSMg01no360_b08.b1 PHD_FILE: MSMg01no360_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:44 2005
         (464 letters)



>mm_chr8_14153714_14154577
          Length = 864

 Score =  816 bits (422), Expect = 0.0
 Identities = 449/458 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatcaggatctgccaacagaaatcgtgttggacgctgggagacctgcttccctcc 66
           |||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaattcgtcaggaacaggcaacagaaatcgtgttggacgctgggagacctgcttccctcc 605

                                                                       
Query: 67  attgtaggtggtgacatgcttaaatgcataactgtatgactgacaaaacttagtgaactg 126
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 604 attgtaggtggtgacatgcttaaatgcttaactgtatgactgacaaaacttagtgaactg 545

                                                                       
Query: 127 acatttgatatatgatcactttatattaaattgttccaacagaaacttgaaagtggtatt 186
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 544 acatttgatatatgatcactttatattaaattgttctaacagaaacttgaaagtggtatt 485

                                                                       
Query: 187 agatgttctgacatattcctctttctaagatggtatccacaggctgactttgggaactca 246
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 484 agatgttctgacatattcctctttctaagatggtatccacaggccgactttgggaactca 425

                                                                       
Query: 247 gacggccactgtgatagtctagtgcatcttggtacgtgtttgccgaggaaaataataggg 306
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gacggccactgtaatagtctagtgcatcttggtacgtgtttgccgaggaaaataataggg 365

                                                                       
Query: 307 gcacagcactgactatcacaacctctcaagggaagaaacatggtcctatgagactgctgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcacagcactgactatcacaacctctcaagggaagaaacatggtcctatgagactgctgt 305

                                                                       
Query: 367 tcagaggtaatccatccatccatcccttgtctaataggtgagcaccagagagacacggcc 426
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcagaggtaatccacccatccatcccttgtctaataggtgagcaccagagagacacggcc 245

                                                 
Query: 427 gctatccagcaagactaccagtggtactaggactgggc 464
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctatccagcaagactaccagtggtactaggactgggc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_b08.g1 MSMg01no360_b08.g1 CHROMAT_FILE:
MSMg01no360_b08.g1 PHD_FILE: MSMg01no360_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:44 2005
         (353 letters)



>mm_chr8_14011613_14012365
          Length = 753

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccaataggctggaggggttggacctggagagaagctggtggacaaagcaaccatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccaataggctggaggggttggacctggagagaagctggtggacaaagcaaccatttg 260

                                                                       
Query: 61  atacaatgagctgatgtcttgctacattttcttagactgttctctcacagtgagctgttg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 atacaatgagctgatgtcttgctacattttcttaggctgttctctcacagtgagctgttg 320

                                                                       
Query: 121 gcacacagatagtgggtagttgttgcactggctagatatgaccctggcaacagttatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacagatagtgggtagttgttgcactggctagatatgaccctggcaacagttatctc 380

                                                                       
Query: 181 ctgcttaaggagagtggaggccactgcagatgaatatctgagctgcaagaaccaaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttaaggagagtggaggccactgcagatgaatatctgagctgcaagaaccaaaactt 440

                                                                       
Query: 241 ggctgggcggtggtggtgcatgcctttaatcccagcacttgaggtggaggtgaagggggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgggcggtggtggtgcatgcctttaatcccagcacttgaggtggaggtgaagggggt 500

                                                            
Query: 301 aagaaggaagcataggcaggtggatctcgatgagtttgtggccagcctg 349
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaggaagcagaggcaggtggatctcgatgagtttgtggccagcctg 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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