BAC Information

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BAC

Clone NameMSMg01-360N20
Chromosome8 (Build37)
Map Location 113,166,247 - 113,166,745
singlet/doubletsinglet
Overlap geneVac14
Upstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
Downstream geneBC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360N20.T7 (MSMg01no360_n20.b1)MSMg01-360N20.TJ (MSMg01no360_n20.g1)
ACCAG469935AG469936
length753787
length of high quality
(start - end)		498 (70 - 567)214 (75 - 288)
definitionCHROMAT_FILE: MSMg01no360_n20.b1 PHD_FILE: MSMg01no360_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:43 2005CHROMAT_FILE: MSMg01no360_n20.g1 PHD_FILE: MSMg01no360_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATGTTTCGAGAATCAACCTTGATTTCTTAATCCTCCTGCCTCC
ATAGCCAAGGATTACAGTGCAGCATCAATCCAGCTGTTCTGTTACAGATG
ATGACTAACATTGTCCCTACTGTCATTCAAAAGTTTTAAAGTTTACAAAT
AAAATATTTTCTAAAAATAACAAACCAAGTTTTTAGCCTATTCCAAAAAT
AGCCTATGGTCTTTCTTCCTCCTGGTAAAGGGGATCTTTATTTCTGTGTT
AAGTAAGAGGCCCACACTGTCTTCTGCCTTCTCTAGTCACAGGAGTGGAG
GAGGGAAGGCTATGGCAGCAGGCCAAGCCTGTTGTGGCATTCACCCTACT
TATGTCATGGTGCGCAGGGCCTGGAGGCAGGTGGAAAGAGGATGCAGCGA
GTGATGGGAAAGGCAGGCTGACCCACGGTTAGGGTCCGTACCCCTGAAGT
CCACCCTCCTTGTCTTATAGGAAGCTACATATCTGTGGATAAAATGTCAG
GATACCAAGCCTGAATCTCCAATCGCCTCAGCCAGAGCCTCTGTTTCCAC
CCAGTCCCCTTCCCTGAGCAACACAGAGCAGACAGACACCACTTGGCAAG
CAGGAATGGCGCTCCCTCCTGCAACTCTGGCACTGTAAAAGACTGACATG
TGAAGATGCCCACCTGAATCCTCGGTTTGTGTGACACCACAAAAGCCTGT
CTC

CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAATTAAGAAAATGGTGTATCAGGG
CCAGCAAGAGGGCTCCGCAGATAAAGGCCCTTGCCACTGAGCACAATGAC
CTGAGTTCGATCCCCAGAACCCCACATAGTAGAAGGAGAGAATCAATCGA
GTCTCATAAGTTGTCTTCTGACCTCCACAGCCATATACCATAGATTGTGG
ATGTGCACAGATAGACACATATGGGGGTTGGGGTGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTTTTTNNNNNNNNNNNTTNNTTNTTNTT
TTTTNTTTTTTTTTTTNTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNNCCNNNNNTTTTTTTNTTTTNNTTTTTTTTTT
NTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNNNNTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTNNTT
TTTTTTTTTNTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTNNTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTNNTTTTTTTNNTTNTTTTTTNTT
TTTTTNNTTTTNTTTNNNTTNTTTTTTTTTTTTTTTTTTTTTNNTTNNNT
NTTTTTTTTNTTTTTTNTTTTNTTTTNTTNNTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTNNTTTTTTTTNTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_n20.b1 MSMg01no360_n20.b1 CHROMAT_FILE:
MSMg01no360_n20.b1 PHD_FILE: MSMg01no360_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:43 2005
         (498 letters)



>mm_chr8_113166047_113166945
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 494/499 (98%), Gaps = 1/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaccttgatttcttaatcctcctgcctccatag-ccaaggattacagtgcagcatcaa 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 699 tcaaccttgatttcttaatcctcctgcctccatagcccaaggattacagtgcagcatcaa 640

                                                                       
Query: 60  tccagctgttctgttacagatgatgactaacattgtccctactgtcattcaaaagtttta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tccagctgttctgttacagatgatgactaacattgtccctactgtcattcaaaagtttta 580

                                                                       
Query: 120 aagtttacaaataaaatattttctaaaaataacaaaccaagtttttagcctattccaaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagtttacaaataaaatattttctaaaaataacaaaccaagtttttagcctattccaaaa 520

                                                                       
Query: 180 atagcctatggtctttcttcctcctggtaaaggggatctttatttctgtgttaagtaaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atagcctatggtctttcttcctcctggtaaaggggatctttatttctgtgttaagtaaga 460

                                                                       
Query: 240 ggcccacactgtcttctgccttctctagtcacaggagtggaggagggaaggctatggcag 299
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggcccacactgccacctgccttctctagtcacaggagtggaggagggaaggctatggcag 400

                                                                       
Query: 300 caggccaagcctgttgtggcattcaccctacttatgtcatggtgcgcagggcctggaggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caggccaagcctgttgtggcattcaccctacttatgtcatggtgcgcagggcctggaggc 340

                                                                       
Query: 360 aggtggaaagaggatgcagcgagtgatgggaaaggcaggctgacccacggttagggtccg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggtggaaagaggatgcagcgagtgatgggaaaggcaggctgacccacggttagggtccg 280

                                                                       
Query: 420 tacccctgaagtccaccctccttgtcttataggaagctacatatctgtggataaaatgtc 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 279 tacccctgaagtccaccctccttctcttataggaagctacatatctgtggataaaatgtc 220

                              
Query: 480 aggataccaagcctgaatc 498
           |||||||||||||||||||
Sbjct: 219 aggataccaagcctgaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space:   433832
Effective search space used:   433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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