Query= MSMg01no361_b02.b1 MSMg01no361_b02.b1 CHROMAT_FILE:
MSMg01no361_b02.b1 PHD_FILE: MSMg01no361_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:59 2005
(574 letters)
>mm_chr2_129202937_129203910
Length = 974
Score = 692 bits (358), Expect = 0.0
Identities = 485/560 (86%), Gaps = 57/560 (10%)
Strand = Plus / Plus
Query: 67 tttttttt--cacatcttctttcatttattg-aaaaaaattttagaaaatggcagttaat 123
|||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 215 ttttttttcccacatcttctttcatttattgaaaaaaaatgttagaaaatggcagttaat 274
Query: 124 aaagg--ac--acaaatcaacaggaacatacgagtggaaaacagagaatataaaactaaa 179
||||| || |||||| |||||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 275 aaagggcacaaacaaattaacaggaacataggagtggaaaacagagaacataaaact-aa 333
Query: 180 aaatgccaccggcttctttaattggttaagagcacaaaaagtaacaggcaggtctatttt 239
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 334 aaatgccactggcttctttaattggttaagagcacaaaaagtaacaggcatgtctatttt 393
Query: 240 aaacaaattaaaaagctattttgtatttttgtaaaaaataattctccccaagtcaa---- 295
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 394 aaacaaattaaaaagctattttgaatttttgtaaaaaataattctccccaagtcaaatat 453
Query: 296 ------------------------------------------atatatatatacacccac 313
||||||||||| ||||||
Sbjct: 454 atatatatatatatgtatatatatatatatatatatatatatatatatatatatacccac 513
Query: 314 aaaaatgctgtgtaaaggaaagctgtcacacttaacaagttgtatcctggatttaaggaa 373
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 514 aaaaatggtgtgtaaaggaaagctgtcatacttaacaagttgtatcctggatttaaggaa 573
Query: 374 atagttgctgatgcaggggtcaacacaaagtcagcaacaagttaacaatgcccactcccc 433
|||||||| |||||||||||||| ||||||||||||||||||||||||| | || |||||
Sbjct: 574 atagttgccgatgcaggggtcaatacaaagtcagcaacaagttaacaatactcattcccc 633
Query: 434 aagccagggcctggctctacagcccaggatggcctcaaat-cattcccccttcctcagcc 492
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 634 aagacagggcctggctctacagcccaggatggcctcaaattcattcccccttcctcagcc 693
Query: 493 tgggaagtgctgggattctgggtgaacactactgtgccccagcaaggt--tagtagttct 550
|||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 694 tgggaagttctgggattctgggtgaacactactgtgccccagcaagttcttagtagttct 753
Query: 551 taagaactgagcattcaaac 570
||||||||||||||||||||
Sbjct: 754 taagaactgagcattcaaac 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_b02.g1 MSMg01no361_b02.g1 CHROMAT_FILE:
MSMg01no361_b02.g1 PHD_FILE: MSMg01no361_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:59 2005
(444 letters)
>mm_chr8_27391678_27392521
Length = 844
Score = 737 bits (381), Expect = 0.0
Identities = 388/391 (99%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 56 tagccttt--aaaaaaatccctcttgttccatttgcttggggttgtcattaccaagtgtg 113
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tagcctttaaaaaaaaatccctcttgttccatttgcttggggttgtcattaccaagtgtg 785
Query: 114 gttcttcatctgggaccatttcaaaatgcaaactctctggttccacctcagacccaccaa 173
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 784 gttcttcatctgggaccatttcaaaatgcaaactctctgcttccacctcagacccaccaa 725
Query: 174 acgagaaactctaaggactaagcaaactatttagacagttctcaagtgagtctgatacat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acgagaaactctaaggactaagcaaactatttagacagttctcaagtgagtctgatacat 665
Query: 234 gctgaactctgaaaagcatttgtcactaattaggattctccagggcagtggaagcagtga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gctgaactctgaaaagcatttgtcactaattaggattctccagggcagtggaagcagtga 605
Query: 294 cagctcccaagaaaggaaataggcctgaaggagttgtcagtgaacatttcagtatcttgc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cagctcccaagaaaggaaataggcctgaaggagttgtcagtgaacatttcagtatcttgc 545
Query: 354 tgccactccttgtagtaaaggttgatgattgtgatcgaaactatccaatcacagaagagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgccactccttgtagtaaaggttgatgattgtgatcgaaactatccaatcacagaagagg 485
Query: 414 gggtagaaagaatgggagagccagtgatggg 444
|||||||||||||||||||||||||||||||
Sbjct: 484 gggtagaaagaatgggagagccagtgatggg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
