BAC Information

Click to search

BAC

Clone NameMSMg01-361D10
Chromosome8 (Build37)
Map Location 67,878,833 - 67,879,354
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405
Downstream geneVaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361D10.T7 (MSMg01no361_d10.b1)MSMg01-361D10.TJ (MSMg01no361_d10.g1)
ACCAG470201AG470202
length743745
length of high quality
(start - end)
601 (49 - 649)522 (77 - 598)
definitionCHROMAT_FILE: MSMg01no361_d10.b1 PHD_FILE: MSMg01no361_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:11 2005CHROMAT_FILE: MSMg01no361_d10.g1 PHD_FILE: MSMg01no361_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCTATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATATTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTCCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGAATCGATTC
GCATTCTTCTACAGGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGATTTACGTCTGGCATGGTGATTCCGCCAGAAGCTCT
TTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTN
NCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACATCTGAGAATGGCATCAAGC
TCACTAGGTGGCTGGAGATAGCCCTGAACTCCTAATCCTCATGCCTACCC
CTCTGCAGTGCTGGGGTTACACACTTGCACCACCACACCCACCTGAGATG
ACTATCACATGATCTAGATACAGTCCCCAACAGTGCTTCTAAAAGACGCC
TTAAAAAAGAACATTTCTGAAGCCATTTGATATGTGTTGTTCTAACACTA
CTATATATATTTTAAGTCAGTAACTTTGCTTGAAATTTTTGCAATGGGGT
AAATTATTATCACAGAAGTTAAAAGGTATTATGCTTATAAAATAACTATT
AAGACAACATCTCAAAGCTGCATGGAGCTGAAAAATTATACAAGTTCTAA
CATCACCAGGAGAATATTTAAACACCTTTCTTCCCCTCATGGAAACAGAT
AAGCACTCACCTACATATGACCAGCTGTCTTTGCAAGACTCACAGAGAGT
TGGCTATCCTCCATAACGGTAGCTGGCATATATATTTTTTTTTCTGTCTT
GTCTTAAATTTAATTGCTTTGGACAGCTCCAGAAGATCCTGCATGANCAC
AGATAGGATCTCAGCACTGAACATCTGAGTAGATAAACACTCTGTGTCAT
TATTTTGTGTCATTGAGTCTTTAAGAATTCCCGAAATGCAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_d10.g1 MSMg01no361_d10.g1 CHROMAT_FILE:
MSMg01no361_d10.g1 PHD_FILE: MSMg01no361_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:11 2005
         (522 letters)



>mm_chr8_67878519_67879440
          Length = 922

 Score =  934 bits (483), Expect = 0.0
 Identities = 513/523 (98%), Gaps = 2/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacatctgagaatggcatcaagctcactaggtggctggagatagccctgaactcctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aaacatctgagaatggcatcaagctcactaggtggctggagatagccctgaactcctaat 777

                                                                       
Query: 61  cctcatgcctacccctctgcagtgctggggttacacacttgcaccaccacacccacctga 120
           ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 776 cctcatgcctaccccgctacagtgctggggttacacgcttgcaccaccacacccacctga 717

                                                                       
Query: 121 gatgactatcacatgatctagatacagtccccaacagtgcttctaaaagacgccttaaaa 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gatgactaccacatgatctagatacagtccccaacagtgcttctaaaagacgccttaaaa 657

                                                                       
Query: 181 aagaacatttctgaagccatttgatatgtgttgttctaacactactatatatattttaag 240
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 656 aagaacatttctgaagccatttgagccgtgttgttctaacactactatatatattttaag 597

                                                                       
Query: 241 tcagtaactttgcttgaaatttttgcaatggggtaaattattatcacagaagttaaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcagtaactttgcttgaaatttttgcaatggggtaaattattatcacagaagttaaaagg 537

                                                                       
Query: 301 tattatgcttataaaataactattaagacaacatctcaaagctgcatggagctg-aaaaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 536 tattatgcttataaaataactattaagacaacatctcaaagctgcatgcagctgaaaaaa 477

                                                                       
Query: 360 ttatacaagttctaacatcaccaggagaatatttaaacacctttcttcccctcatggaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttatacaagttctaacatcaccaggagaatatttaaacacctttcttcccctcatggaaa 417

                                                                       
Query: 420 cagataagcactcacctacatatgaccagctgtctttgcaagactcacagagagttggct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cagataagcactcacctacatatgaccagctgtctttgcaagactcacagagagttggct 357

                                                      
Query: 480 atcctccataacggtagctggcatatatatttttttttctgtc 522
           ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 356 atcctccataacggtagctggcatatata-ttttttttctgtc 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)