BAC Information

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BAC

Clone NameMSMg01-361L09
Chromosome8 (Build37)
Map Location 119,969,867 - 119,970,241
singlet/doubletsinglet
Overlap gene4933407C03Rik
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
Downstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361L09.T7 (MSMg01no361_l09.b1)MSMg01-361L09.TJ (MSMg01no361_l09.g1)
ACCAG470571AG470572
length743746
length of high quality
(start - end)		479 (51 - 529)537 (80 - 616)
definitionCHROMAT_FILE: MSMg01no361_l09.b1 PHD_FILE: MSMg01no361_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:50 2005CHROMAT_FILE: MSMg01no361_l09.g1 PHD_FILE: MSMg01no361_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCATGCCAGTATGAGGGTGGGCGAAAGGGTCCTTTCTG
GCCACGCTCAGAGTGTTGTTAGCTAACGGCCATCAAGGCTCAGTACACAC
AGCTAGCCTTCCCTTGCACAGCCCTGAAACGGCTCCATATGCCTTTTCTT
TTCTTTTCGCTTGTTGGTCCTTCTTGGTGCTTGGAGATCAACTCAGGGCG
TTGCACATGCTAGGTACACGCTCTGCCACCAGAGTACCACACTGGCCTTT
CCTCCTTCTTTCCTGCCTTCCTTCCTTTCTTCCTTCTGCAGACAGGGTTT
TATTATGTAGCTCAGGGTAGCCCCAAACTGGAATTATAAGCAGTAGTTCT
CAACCTGTGTGTTGAGATCCCTGGGGGGGTAGGAGTGGGGGTGGAGNCAA
AAGACCCTTTCATAGGGGTTGCATATCAGATATTGATGCAATGCTTCATA
GCAGTAACAAAACTACAATTATGAAGTAGCACCAAAAAGTAACTGTATGG
TGGGTAGTCACCACAACATGAACGGATGTATTAAAGGGCTGCACCATTAT
CAGGGTTGATACCCATTGAACTATACAGGTACGCGCGTCCTGCCTCCTAC
TATGGTGATTGTAACTGCCCCTTTTTACCGTTCCCCAATTAACGCCGCTA
TATCCACCTATCTTACCTCACATCATCCGTTCTTACCACGCTG

NTTTTCGATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGACAGATGAAGCTGGC
CTCAAACCCACAGGGATTCTCCTATCCTTGCTTCCCTTGTGCTGGAATTA
AAGGCTTGCGTCACCACATCTGGCCTGGGCTCTTTGAGAGAAATAAGGTC
ACAACTACCACACGGATAGTCATTTTCTGTGATCAAAAGCCCAGGCAATA
TTTTCTTTTCATTAAAAAAAAAAAGATTTATTTATTTATTTTATGTATAT
GAGCACGCTGTAACTATGCAGATAGTTGTGAGCCATTGTGTGGTCGCTGG
GAAATGAACTCAGGACCTCTGCTCACTCCAGCCCTGTTCGCTCTGGCCCA
AAGATTTATTTATTATTACATGTGAGTACACTGTAGCTGTCTTCAGACAC
ACCTGAAGAGGGCGTCAGATCTCATCACGGATGGTTGTGAGTCACCATGT
GGTTCCTAGGGTTTGAACACAGGGTCTTCAGAAGGGCGGTCAGTGCTCTT
AACTGCTGAGCCATCTCTCCAGTTCCCCAGGCAATATTTTCAAGTTATTT
CACCAGGATTCGTTCAGATAAGAGTCCAGACATGGTGGCCTCTGCATGTC
TGCTTATTAAGTCTCTAGAGGAATTTAAGATATTTTTTTTCAAATCAGGC
ATCCCATCTGCATGGNTTTCCATATGGGGGCTTGGCTGAATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_l09.b1 MSMg01no361_l09.b1 CHROMAT_FILE:
MSMg01no361_l09.b1 PHD_FILE: MSMg01no361_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:50 2005
         (479 letters)



>mm_chr8_119969867_119970745
          Length = 879

 Score =  725 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccatgccagtatgagggtgggcgaaagggtcctttctggccacgctcagagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaattcttccatgccagtatgagggtgggcgaaagggtcctttctggccacgctcagagt 316

                                                                       
Query: 65  gttgttagctaacggccatcaaggctcagtacacacagctagccttcccttgcacagccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttgttagctaacggccatcaaggctcagtacacacagctagccttcccttgcacagccc 256

                                                                       
Query: 125 tgaaacggctccatatgccttttcttttcttttcgcttgttggtccttcttggtgcttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgaaacggctccatatgccttttcttttcttttcgcttgttggtccttcttggtgcttgg 196

                                                                       
Query: 185 agatcaactcagggcgttgcacatgctaggtacacgctctgccaccagagtaccacactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agatcaactcagggcgttgcacatgctaggtacacgctctgccaccagagtaccacactg 136

                                                                       
Query: 245 gcctttcctccttctttcctgccttccttcctttcttccttctgcagacagggttttatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gcctttcctccttctttcctgccttccttcctttcttccttctgcagacagggttttatt 76

                                                                       
Query: 305 atgtagctcagggtagccccaaactggaattataagcagtagttctcaacctgtgtgttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  atgtagctcagggtagccccaaactggaattataagcagtagttctcaacctgtgtgttg 16

                          
Query: 365 agatccctggggggg 379
           |||||||||||||||
Sbjct: 15  agatccctggggggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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