BAC Information

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BAC

Clone NameMSMg01-362C02
Chromosome8 (Build37)
Map Location 23,066,445 - 23,066,820
singlet/doubletsinglet
Overlap genenone
Upstream geneAY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13
Downstream geneC86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362C02.T7 (MSMg01no362_c02.b1)MSMg01-362C02.TJ (MSMg01no362_c02.g1)
ACCAG470889AG470890
length782767
length of high quality
(start - end)
424 (45 - 468)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no362_c02.b1 PHD_FILE: MSMg01no362_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:23 2005CHROMAT_FILE: MSMg01no362_c02.g1 PHD_FILE: MSMg01no362_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGCTGTTTTACAATATGTATTAAGTGTAAAGTCATGTGCTTTCT
TCTCAATGATAACTTGCCATGGTTTAGACACAAAAGGACTCACATTAGTT
GTATGTGTGTGTACATGCGAGCACATGCAGGTGTTTGTGTATGTGTGTCA
GAACACATGTGACAGTCACATGGTGGCCAGAAGAGATTGTCAACTGTCAT
TCCTCAGACTTTATCCTCTTTCTTTTGAGACAGAGACTCTCAGCAGTTTG
TCTCTAGCCACATCTGCTAACCTTGCTATCAGTGATACACCAGGGATCCA
TTTGTCTCTGCTTTCACAGACCTGGGGTCACAAGCATGGGTCTGTGAATA
CCTGGCTTGGACGCAGGTTCAAGTCTTTACTAGGAGTTAATTGTTTTTTG
ACAGAGGTATCATTCCAGCCTCAGAAATACTCTCAACTATTACCTTCTGA
CAGAGCTAAGTTTGTTTTAAAAGATTCTTTTATCCGTCTATTTACAATAT
ACCTGGATTATGTGTAGTTTCAACTTTCCCTTTTGAAAAACCCGCTCTCA
CTTTTAATATATAATTCTACTTCAGCGACCCTTTTTCCTACACATTTTCC
CCTGTTTTCCCCTTTATTTCTTTTTAATTTTTAATCCCCGTGTATCTTTA
CCCGCCCCGCTCCTCTAACCCCGTGGTGCGTATTTTCACCTCCTCCATGT
TCTACATCCTGTTCCACCTCCTTCTCATACTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGATGAAATTTATGATTGTTCTTTT
AAATTCTGTGTCCTGGGGTTCATCTTTGGTAATTCTCATTGGCAAACTTC
TCTATAGAACTGGTAGGTTTTAAAGAAAATACTCCCTTGACCATTCATTT
GTGTCATTGATGTTTTTGCAATGAGATTTGGACATGTAGATTTTGTTGTT
AGTTATGTGTCTGATACGGACAAAGCAGAACGGAGCAGAAGAAAGGATGT
ATTGGGCCTTAAGGTTGAAATGGCTAGGGTGGAATGAAATCGAGTAGACA
GAGAGGGCTGAACTGGTGTGCAGAATGTATGTCCTGGTATAAGCCTGGAG
TGGGGGTGGGGGCAAGATCTGGCTGGGTGTAAAAGTCAGATGTGTTGTGG
GAGAGGTCTGTGAGTTCTGATTATCAAGTCTGAAGTANAAGCAACAAGTA
TTCTTAATCACAGAGCCATCTACACCCAACCAGATCATATTTTGGTGGTT
CTAATTCTACTGCAGAATTGATGGAAATTTGAGTTTGAATCCCCTCTATT
GATCAAACATCAAAAGTCACTCCAGGCCCCCATTCTGGGAAAAAGTTACT
GCTTATTCTGCCTCTAATTTCACCCCTGTTCCGTTATTTCTCTGTTTTCG
GTCGTCTGTTTCTCTCTCGTCTTTAACTTTTTTTCTTTTTCTTTTGCATT
AATTCTTATCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_c02.b1 MSMg01no362_c02.b1 CHROMAT_FILE:
MSMg01no362_c02.b1 PHD_FILE: MSMg01no362_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:23 2005
         (424 letters)



>mm_chr8_23066445_23067268
          Length = 824

 Score =  704 bits (364), Expect = 0.0
 Identities = 373/376 (99%), Gaps = 1/376 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagctgttttacaatatgtattaagtgtaaagtcatgtgctttcttctcaat 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggaattcatagctgttttaaaatatgtattaagtgtaaagtcatgtgctttcttctcaat 317

                                                                       
Query: 64  gataacttgccatggtttagacacaaaaggactcacattagttgtatgtgtgtgtacatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gataacttgccatggtttagacacaaaaggactcacattagttgtatgtgtgtgtacatg 257

                                                                       
Query: 124 cgagcacatgcaggtgtttgtgtatgtgtgtcagaacacatgtgacagtcacatggtggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cgagcacatgcaggtgtttgtgtatgtgtgtcagaacacatgtgacagtcacatggtggc 197

                                                                       
Query: 184 cagaagagattgtcaactgtcattcctcagactttatcctctttcttttgagacagagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cagaagagattgtcaactgtcattcctcagactttatcctctttcttttgagacagagac 137

                                                                       
Query: 244 tctcagcagtttgtctctagccacatctgctaacct-tgctatcagtgatacaccaggga 302
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 136 tctcagcagtttgtctctagccacatctgctaacctgagctatcagtgatacaccaggga 77

                                                                       
Query: 303 tccatttgtctctgctttcacagacctggggtcacaagcatgggtctgtgaatacctggc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tccatttgtctctgctttcacagacctggggtcacaagcatgggtctgtgaatacctggc 17

                           
Query: 363 ttggacgcaggttcaa 378
           ||||||||||||||||
Sbjct: 16  ttggacgcaggttcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)