BAC Information

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BAC

Clone NameMSMg01-362C23
Chromosome8 (Build37)
Map Location 109,673,979 - 109,783,074
singlet/doubletdoublet
Overlap geneCyb5b
Upstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
Downstream geneLOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362C23.T7 (MSMg01no362_c23.b1)MSMg01-362C23.TJ (MSMg01no362_c23.g1)
ACCAG470931AG470932
length752787
length of high quality
(start - end)		479 (71 - 549)268 (78 - 345)
definitionCHROMAT_FILE: MSMg01no362_c23.b1 PHD_FILE: MSMg01no362_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:27 2005CHROMAT_FILE: MSMg01no362_c23.g1 PHD_FILE: MSMg01no362_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,673,979 - 109,674,453)(109,782,815 - 109,783,074)
sequence
NCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTAGAGACTGTTTGGTCAGTAGTGGAAGAAACTTTGGACA
TCTACCCTTGCCCCAACTGCTGTCCTAAGGCCTTGTACCTAAGAGCCATG
GAGTCCAACGCCACTTGTGATTTACACAGTGGATTGCTGGGCTCACGCCT
CTCTTAGCACACTCTCTTTAACACACATCCCAAACCTCTGGGCAAGGAAG
GTAGAGGTCACCACGCCCATTTTAATTGTTGAGCCTTTTGGAGCCTAAAG
GGAACCAGTCTGGGGGACAGCAAAGCTTGTAACCCCGGGGGCTGCAATTC
TGGATGGGAAGATCAAGGGAAAATGCGGGTCCGGTCATTCGGGGACCCAG
GGTGGCAGGAAGGGAAAAGAGACGCTGGAAACCGGCTCTTTTCTTTTAGG
GCCGGGCCTGCCCATGGGCCGAGCAGAGAGAATGCTCTCCTGTGGTGACA
CCTGTCACCCGGCCACGTTTAGGCGCTGGTCCAAAATCACGATATCTGAT
TGGCAAGGTTGGAGGGGCTGGTCGACGCCGATTTGGCAGTCCGACGTCTT
AACAGTTTTACCCGGTTACGGAAGCCCAAGAGGACCCAGCGCGGTCTCGC
AAGTCCAGTAATTTAACGTTGTATTCCCCGATACCGTTGTAAAATTTTTT
CTCACTTCTTGTGTATCCTCGGAAGCCCCCGTTTATTCCCCTTAACACTC
AG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGAATTTGACCAGTTCTGTT
TATGTTGGAGATTTATTTCTGAATCAGAGGAAGGAGTTTCCAGGTGTAAA
ATTCAGTTTAAAAAGCATGCGTGTTGAGCAAGAAAGTATTTGTTCTTTCG
GATTCCAAAGATAGATCTTCATCTGGGAGAAAGAAAAAGCCTAAGAAGGA
CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGANGGAA
GGNNNGAAGNAGNGGGNAGGAGGNAGNAGAGTGAGAGGGAGAGAGAGAAA
GGGAAAGAAGAAAAGAGGGGGGGACANAAAAAAGAAAAAAAAAGGAAGGA
AGGAAAGAAAAAGAAGGGGAGAAAAAAAAAAAAAGGAAAAAAGGAAAAAA
AAAAGGGTATTGGAGAAGGAAAGGAGAGAGAAAGAAGTTTAAAGATTTTT
TTTTTTTCATCTTTTTTTTTTTTTTTTCGCCCCCCCCTTTTTTTCCCTCT
CTCCCCCTTTTCCCCCCTTTTTCTTTTTTTTCTTTCCCTCTCTCGTCCCA
CTCCCATTTATCCTTCTTCTTGGTCCCCCCCACGATCGCTACATTTTTCC
CCTCCTCTATCTATTTCACCATACTTTCTTCTTCTTTTTCTTCCCCCCCC
CTCTTCCCTCTCCTTTTTTTCCATGCCCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_c23.b1 MSMg01no362_c23.b1 CHROMAT_FILE:
MSMg01no362_c23.b1 PHD_FILE: MSMg01no362_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:27 2005
         (479 letters)



>mm_chr8_109673775_109674653
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtcagtagtggaagaaactttggacatctacccttgccccaactgctgtcctaaggcctt 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtcagtagtggaagaaacttaggacatctacccttgccccaactgctgtcctaaggcctt 264

                                                                       
Query: 65  gtacctaagagccatggagtccaacgccacttgtgatttacacagtggattgctgggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtacctaagagccatggagtccaacgccacttgtgatttacacagtggattgctgggctc 324

                                                                       
Query: 125 acgcctctcttagcacactctctttaacacacatcccaaacctctgggcaaggaaggtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acgcctctcttagcacactctctttaacacacatcccaaacctctgggcaaggaaggtag 384

                                                                       
Query: 185 aggtcaccacgcccattttaattgttgagccttttggagcctaaagggaaccagtctggg 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtcaccacacccattttaattgttgagccttttggagcctaaagggaaccagtctggg 444

                                                                       
Query: 245 ggacagcaaagcttgtaaccccgggggctgcaattctggatgggaagatcaagggaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggacagcaaagcttgtaaccccgggggctgcaattctggatgggaagatcaagggaaaat 504

                                                                       
Query: 305 gcgggtccggtcattcggggacccagggtggcaggaagggaaaagagacgctggaaaccg 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcgggtccgttcattcggggacccagggtggcaggaagggaaaagagacgctggaaaccg 564

                                                                       
Query: 365 gctcttttcttttagggccgggcctgcccatgggccgagcagagagaatgctctcctgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctcttttcttttagggccgggcctgcccatgggccgagcagagagaatgctctcctgtg 624

                                                                  
Query: 425 gtgacacctgtcacccggccacgtttaggcgctggtccaaaatcacgatatctga 479
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgacacttgtcacccggccacgtttaggcgctggtccaaaatcacgatatctga 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_c23.g1 MSMg01no362_c23.g1 CHROMAT_FILE:
MSMg01no362_c23.g1 PHD_FILE: MSMg01no362_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:27 2005
         (268 letters)



>mm_chr8_109782699_109783366
          Length = 668

 Score =  495 bits (256), Expect = e-144
 Identities = 259/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggaatttgaccagttctgtttatgttggagatttatttctgaatcagaggaaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agtggaatttgaccagttctgtttatgttggagatttatttctgaatcagaggaaggagt 317

                                                                       
Query: 61  ttccaggtgtaaaattcagtttaaaaagcatgcgtgttgagcaagaaagtatttgttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttccaggtgtaaaattcagtttaaaaagcatgcgtgttgagcaagaaagtatttgttctt 257

                                                                       
Query: 121 tcggattccaaagatagatcttcatctgggagaaagaaaaagcctaagaaggactctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcggattccaaagatagatcttcatctgggagaaagaaaaagcctaagaaggactctgtg 197

                                                                       
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagag 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 196 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagag 137

                               
Query: 241 agagagagagagagagagag 260
           ||||||||||||||||||||
Sbjct: 136 agagagagagagagagagag 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 27
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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