BAC Information

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BAC

Clone NameMSMg01-362G03
Chromosome8 (Build37)
Map Location 36,293,658 - 36,486,216
singlet/doubletdoublet
Overlap genePpp1r3b
Upstream geneLOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804
Downstream geneThex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362G03.T7 (MSMg01no362_g03.b1)MSMg01-362G03.TJ (MSMg01no362_g03.g1)
ACCAG471081AG471082
length762778
length of high quality
(start - end)		561 (42 - 602)390 (69 - 458)
definitionCHROMAT_FILE: MSMg01no362_g03.b1 PHD_FILE: MSMg01no362_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:43 2005CHROMAT_FILE: MSMg01no362_g03.g1 PHD_FILE: MSMg01no362_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,485,716 - 36,486,216)(36,293,658 - 36,294,047)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTCCCATTGCTCATTTTTTCCCCCTCTCTGGCTTCTTCTCTGGTGTGT
ATTTTATAGTACTCTGCACTCTAATGATTTTCTGTTCCTTCTTCATTAAT
AATTGAGTCCCCTTTGTATTAACCATTACATTAAGTACTGGGGGCTAAGA
GACTATTAAAACATGGCCTCTTCACAGAAGGAATTTACCATCAATTATAA
TGTGAAGAAGGAAGGAGCATTACATGGTACACTGCAAAGAGTGCTGATTT
TATTCTGAAAACGATGATTGTCATTGCAGAAGTTTTGAAAACTTTAACTG
TTTTATTGAGGTATAATTGACACACAATAAACTGCATACTTGAAATGTAA
AAGTTGATGTGTTTGGGTATCTTTATATGCCCATAACATCACTGCTACTA
TGGTGACTGTCATAGTCAATTTTTTTTTTCTGCTATAAAAGATTACCTCT
GCTATAAAAGATTACCACTATTTGGGTAATAAGTAAACAACAAAAGCTCT
TTGGTTTACTAGCTTGAAGCTCAGAGTCACAAGCTTGGACTGCATCATAA
CACGCACCAGAAGGGTAAGAAAAGAGAGGAAATTGGCTTGCCTCACCCTT
TCTATCAAGACTTCACTCTCTTGATAACAGTGCTATTCCTAAGCCCATGA
CTTCAGAGCCATTGCAATCCAATTCTCCCTCAAAGGCCAACTTTTCCTCG
TTTGTTACGAAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCCGGGACATAGTTCAGTGATGGCTATATGA
CTCAGGAGGTCATGGGTGGTCATGAAGGGCAGAAGAAACCCAGGTGAGCC
GTGCTGGCTGGGGAAGATTTCCTAGGAAGAAAGATATTGAGATACCTAGA
AATCACAGGTGATATTTGGAGAGGTCAAAGCCTAGGCTGGCCTTGAACTC
ATGGCAAGCCTCTGCTTCAGCTTCCCAAGTTCTGGTATGAGAGGCGTGAG
CCAGCACACTTGGCTCGTAGGGTTATGAATACACATTTTTCTATCCAATA
TCTCCACATGATTTCAATACACCAGACATGAGGGAGAGGGAAGAGTTAGA
GAAACAGATTTTCTTGTTTAGTTTAGTTGATGAAAAAGCTTAGTTGATGA
AAAAGGACATACATCAACTATTTAATTTTAATACTAATGAACTATTCAAT
TAATACCTTAAGCTATGTTTCATCACAGACACTTCATAGTATTGTAGAAT
CCAAGATATCAGCTTGAGGTGTTTAGTGCATCAGTTTTCTTAAGGAGGGA
GGGGCAGTTCGGGATACTTCATGTATGCTGATCGCGTTGATAGAGCCCGC
GTTTTTTGTTTCCTCCGCCGACGCTGCCCTGACTTTGTTTCTCCCCTCTT
CCCCTTCCCTCGTGTCTCCTTCCCCTTTCCCCCCCCCCGCTACCTCCCTC
CTCCTTTTTTTTCTTTCCCCCCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_g03.b1 MSMg01no362_g03.b1 CHROMAT_FILE:
MSMg01no362_g03.b1 PHD_FILE: MSMg01no362_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:43 2005
         (561 letters)



>mm_chr8_36485716_36486676
          Length = 961

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcccattgctcattttttccccctctctggcttcttctctggtgtgtattt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattcagtcccattgctcattttttccccctctctggcttcttctctggtgtgtattt 442

                                                                       
Query: 64  tatagtactctgcactctaatgattttctgttccttcttcattaataattgagtcccctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagtactctgcactctaatgattttctgttccttcttcattaataattgagtcccctt 382

                                                                       
Query: 124 tgtattaaccattacattaagtactgggggctaagagactattaaaacatggcctcttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtattaaccattacattaagtactgggggctaagagactattaaaacatggcctcttca 322

                                                                       
Query: 184 cagaaggaatttaccatcaattataatgtgaagaaggaaggagcattacatggtacactg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaggaatttaccatcaattataatgtgaagaaggaaggagcattacatggtacactg 262

                                                                       
Query: 244 caaagagtgctgattttattctgaaaacgatgattgtcattgcagaagttttgaaaactt 303
           |||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||
Sbjct: 261 caaagagtgctgattttattctgaaaacgatgaaagccattgcagaagttttgaaaactt 202

                                                                       
Query: 304 taactgttttattgaggtataattgacacacaataaactgcatacttgaaatgtaaaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactgttttattgaggtataattgacacacaataaactgcatacttgaaatgtaaaagt 142

                                                                       
Query: 364 tgatgtgtttgggtatctttatatgcccataacatcactgctactatggtgactgtcata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgatgtgtttgggtatctttatatgcccataacatcactgctactatggtgactgtcata 82

                                                                       
Query: 424 gtcaattttttttttctgctataaaagattacctctgctataaaagattaccactatttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gtcaattttttttttctgctataaaagattacctctgctataaaagattaccactatttg 22

                                
Query: 484 ggtaataagtaaacaacaaaa 504
           |||||||||||||||||||||
Sbjct: 21  ggtaataagtaaacaacaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_g03.g1 MSMg01no362_g03.g1 CHROMAT_FILE:
MSMg01no362_g03.g1 PHD_FILE: MSMg01no362_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:43 2005
         (390 letters)



>mm_chr8_36293458_36294247
          Length = 790

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccgggacatagttcagtgatggctatatgactcaggaggtcatgggtggtcatgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccgggacatagttcagtgatggctatatgactcaggaggtcatgggtggtcatgaagg 260

                                                                       
Query: 61  gcagaagaaacccaggtgagccgtgctggctggggaagatttcctaggaagaaagatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaagaaacccaggtgagccgtgctggctggggaagatttcctaggaagaaagatatt 320

                                                                       
Query: 121 gagatacctagaaatcacaggtgatatttggagaggtcaaagcctaggctggccttgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatacctagaaatcacaggtgatatttggagaggtcaaagcctaggctggccttgaac 380

                                                                       
Query: 181 tcatggcaagcctctgcttcagcttcccaagttctggtatgagaggcgtgagccagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggcaagcctctgcttcagcttcccaagttctggtatgagaggcgtgagccagcaca 440

                                                                       
Query: 241 cttggctcgtagggttatgaatacacatttttctatccaatatctccacatgatttcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttggctcgtagggttatgaatacacatttttctatccaatatctccacatgatttcaat 500

                                                                       
Query: 301 acaccagacatgagggagagggaagagttagagaaacagattttcttgtttagtttagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaccagacatgagggagagggaagagttagagaaacagattttcttgtttagtttagtt 560

                                         
Query: 361 gatgaaaaagcttagttgatgaaaaaggac 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 gatgaaaaagcttagttgatgaaaaaggac 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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