BAC Information

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BAC

Clone NameMSMg01-362O01
Chromosome8 (Build37)
Map Location 130,359,375 - 130,359,641
singlet/doubletsinglet
Overlap genenone
Upstream geneTomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
Downstream geneNrp1, LOC668494, Itgb1, LOC100042659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362O01.T7 (MSMg01no362_o01.b1)MSMg01-362O01.TJ (MSMg01no362_o01.g1)
ACCAG471458AG471459
length796862
length of high quality
(start - end)
271 (48 - 318)59 (72 - 130)
definitionCHROMAT_FILE: MSMg01no362_o01.b1 PHD_FILE: MSMg01no362_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:24 2005CHROMAT_FILE: MSMg01no362_o01.g1 PHD_FILE: MSMg01no362_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTTTATGTCTTATAGTTTATTTCTGCCTATGTGTTTTCAAAA
ATGAAGTTATCTTTACTGACATGGAATCTTTTATTTTTTTGGAGTACACT
ACTGAGTCCAGTGGAAAGTATCTCTCCCTTGTTAGGCTTTTAGCTCTGTG
AGTGTTGGAGACAGAGCCCTTGTCTTCCTAGTCCAGGAGTGGAGTGAACC
TGTGTTTCATGATCACTGTAGAGAGAATCTCTTGTGCACTGTCTGGAGGC
ATCAACTGTCAATAAAAAGCCTATGGCCAATGAGCTAAGCCAAGATTGGA
CATGCAGCACGGAGAGAGGATTCTGGGATAGAGACAGGGCAAAGAATATT
CACCCTGAACTCTGAGGAATATGGTTGCATGACACTAATGCAAGGCACTC
ATCCTCCTGGTGCGACTAAGAATACCATCCATGCGATAAGATAATTACAG
TATGAGCTATCTATAGTCTAAGCTTTCGCCCTATTCCACTACTCTTTATT
ATTCTCCCCCCCCATTTGTTATTTCTTGGATTTCGCTCCCAACTTGTTTT
TTCTCCTTTCCCCTGATTTTCCGTTTTTTTTTTAGATGTCTCCCCCTCTT
CCACTCCTTCCCCTTCCCTTTTCTTTCCCCTCTTTTTTTTCCCCCCCCGC
CCGCCTTTCTATTCTTTCTCTTTCGCCTCTTCTCATCTCCTTTAACCTCT
CTCCTCGTTCTCTCGTTTTTTCTTACCCTCTATCTCTGTCTTCCAC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGTCTAGTCAGAGAACTAACTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTG
TCTCTCTCTCTCTCCGTCTCTCCGCGTGGTTCTTTGCCTGCCTCTGTGTG
CGTTGGCGCGGTCTCTCGCGTGCCGGGACCTCGTACTCGCCGTTCCTACC
TCCCCCTGACTCGGTGAACGTCAGGCCGCGCTTGGCGAGCGACGCCGTCG
CAACGCACCTTCTTTTTTCTTTTTAACAGATGTTAGGGTTTGTGTGGGTT
CGGGGGAGAGATCCGGGTAGGAAGAATTAAGCGATCGCGTTTTAGTCCGA
ACAGGTATTAGTAGATACCACCAAAATTAAAGGTGTTTTTGACTTGCTCC
ATCTTTGTTATTTTTAGTTTAGAGCTGTTGTAATGAAATAATATATAAAG
GGCTTTTGTATTATAGAATTGATAATACTAGATTGCGTGTGGGAGAGGTG
ACGAGTGATAGCAACCTTTTCGCGTTTTTACCCTCCTTCTGTTCTTTGTT
GTTTTGGGCCGCACAAGCGATATTCTACCCGCCTAACTATGCCCGTTATC
CCCAGACCTCGTGCTTCTTTATTATAGTTTTCGCGCGTAGGACGCCCTCT
GACGTGCTTTTATTCCTTAATTACTTACGCTCCTGATGCGCATAGCATCT
ACATTATACGTCTACGACTTACTCTTTTAAGCATCGTATTTAGTCATGCG
CTTTATCCCGCCGCCGGGCTAGTAATTCTTATCTCTTTATTTGTTATCAA
GCCCTCGTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_o01.b1 MSMg01no362_o01.b1 CHROMAT_FILE:
MSMg01no362_o01.b1 PHD_FILE: MSMg01no362_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:24 2005
         (271 letters)



>mm_chr8_130359171_130359841
          Length = 671

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttatgtcttatagtttatttctgcctatgtgttttcaaaaatgaagttatc 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttatatgttatagtttatttctgcctatgtgttttcaaaaatgaagttatc 264

                                                                       
Query: 65  tttactgacatggaatcttttatttttttggagtacactactgagtccagtggaaagtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 tttactgacatggaatcttttatttttttggagtacactactgagtccagtgggaagtat 324

                                                                       
Query: 125 ctctcccttgttaggcttttagctctgtgagtgttggagacagagcccttgtcttcctag 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 ctctcccttgttaggcttttagctctgtgagtgttggagacagagtccttgtcttcctag 384

                                                                       
Query: 185 tccaggagtggagtgaacctgtgtttcatgatcactgtagagagaatctcttgtgcactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccaggagtggagtgaacctgtgtttcatgatcactgtagagagaatctcttgtgcactg 444

                                      
Query: 245 tctggaggcatcaactgtcaataaaaa 271
           |||||||||||||||||||||||||||
Sbjct: 445 tctggaggcatcaactgtcaataaaaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)