BAC Information

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BAC

Clone NameMSMg01-364O15
Chromosome8 (Build37)
Map Location 51,974,528 - 51,975,011
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517, LOC623872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364O15.T7 (MSMg01no364_o15.b1)MSMg01-364O15.TJ (MSMg01no364_o15.g1)
ACCAG472996AG472997
length781824
length of high quality
(start - end)
488 (49 - 536)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no364_o15.b1 PHD_FILE: MSMg01no364_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:13 2005CHROMAT_FILE: MSMg01no364_o15.g1 PHD_FILE: MSMg01no364_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATACTATGTTTCCAAGCAAAAATCAGCCCCTGAAGTGATTAC
ATCTTACCTGATAATGTCTCCTTATAGAATCTTGGCATAAATCAAACTCT
TCTAAAATTTTTACTTTACCTAGAAGAATGTTTCCTTTAGAGAATGATTC
AAATAAATCATGTTACATTATGTGCACGGAGGTATACTTCTTTAACAGCA
TCTTTCTAAATAAATAATTCAACTTCAAAGTCAGTATAATCTAAGAACAA
CTCTTCATTGCTCTTTTGTTTACTTAGGATTGAATAGATCTTCATCCACC
ATCTCTTCTGTAGAAGCACCTTTTAAGACATGGAGAGGTACAGAGTCCAG
AAACAGGCATCTTCTCAAACTCTCTAGTTGTTGGGTGCCTCTGCCCATGC
ATGTAACTCCAGAAGGAAAATTTGATAGTAACAAAGTGGGACATTTTTGT
ATTGGGACAAATAATACGAGGGGCATAAGCTTGGCTCCTTGGGGAAGCAC
TGCTAAGGAGATGAAATTCCTCCATAACTGGAAAGATAAAAAGTTGAAAC
TTAATAAAAGGAGGGGGAAAGGACCCTCTGAGAACTCTTTTAGGTAGTCT
TTAGCGGTGAACTAAGTGAGGATAAATAAATGGGCTTATCTCCCTTTATC
ACTGGCTTTTATTTTAAGAAATGATAATAATGTGGTGATATATCTTATCA
TTCCTCATCAACTTTTTTTTATTTAAATTCC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAGATTTATATGTTTGAAT
TCTTTTAAAAAATATTTGTTGACTAAAGGAGATAAAGGGCATAGAAACCT
CATAGGAAGAACAACAATATCAACTAACTTTACCTCTCAGAGCTTCCAGG
GACTAAACCACCAACCAAAGAGTATACATGGGTGAGTCCATGGCTTTTGC
TACATATGTAGCAGAGGATTGCCTTATCTTACATCAATGGGAGGGGAGGG
GCTTCATCCTGGGAGGCTTTTTGCCCTAGCAAAGGGGATGCTAGAGGGGT
GAGTGGGTGGGTGAGTGTNNNNNNNNNNNNNNTNNNTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTGCCCCCCTTTTCGTTGTNTTTGTTTTGGTTGT
GTTGCTTTCTCCTTTCTTCGGCTCGCTTCTTTTCGCCTCCTTTCGCGTTT
TCTCTCCCTTGCTTCCGCTTTGTCTGTTCTTTTCCTGTTCCCTCGCCTCC
TCGTCGCCCCTTCTCCTTGTTCTGTCTCCCTTTCCGCTTTTCGTTTTTCC
TGTGTCTGTGTGTCGTTTGTTGGTCTTTCTCTCTTCCGTCTTGTTCGTTT
GCTCTTGTGTCTTGTTGTCTCTCTTTTGCCTTCTGTTCTTTTTTGCTTCG
TTGTTTTGTTCGTCCGTTGTCTCCGCCGGTCTCGGTTTCTCTTTCTCGTC
GTTGCTCCTGCCTCCGCTCCGCGCTTGTTCCGTTCCGCCGCCTTTCTCCT
CGCTTTTCTTCTGTTGTGTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_o15.b1 MSMg01no364_o15.b1 CHROMAT_FILE:
MSMg01no364_o15.b1 PHD_FILE: MSMg01no364_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:13 2005
         (488 letters)



>mm_chr8_51974324_51975211
          Length = 888

 Score =  859 bits (444), Expect = 0.0
 Identities = 474/484 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatactatgtttccaagcaaaaatcagcccctgaagtgattacatcttacctgat 64
           ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 688 gaattcatactatgcatcaaagcaaaaatcagcccctgaagtgattacatcttacctgtt 629

                                                                       
Query: 65  aatgtctccttatagaatcttggcataaatcaaactcttctaaaatttttactttaccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatgtctccttatagaatcttggcataaatcaaactcttctaaaatttttactttaccta 569

                                                                       
Query: 125 gaagaatgtttcctttagagaatgattcaaataaatcatgttacattatgtgcacggagg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 568 gaagaatgtttcctttagagaatgattcaaataaatcatgttacattatgtgcatggagg 509

                                                                       
Query: 185 tatacttctttaacagcatctttctaaataaataattcaacttcaaagtcagtataatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatacttctttaacagcatctttctaaataaataattcaacttcaaagtcagtataatct 449

                                                                       
Query: 245 aagaacaactcttcattgctcttttgtttacttaggattgaatagatcttcatccaccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagaacaactcttcattgctcttttgtttacttaggattgaatagatcttcatccaccat 389

                                                                       
Query: 305 ctcttctgtagaagcaccttttaagacatggagaggtacagagtccagaaacaggcatct 364
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 388 ctcttctgtagaagcaccttttaagacatggagaggtacattgtccagaaacaggcatct 329

                                                                       
Query: 365 tctcaaactctctagttgttgggtgcctctgcccatgcatgtaactccagaaggaaaatt 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctcaaactctgtagttgttgggtgcctctgcccatgcatgtaactccagaaggaaaatt 269

                                                                       
Query: 425 tgatagtaacaaagtgggacatttttgtattgggacaaataatacgaggggcataagctt 484
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 268 tgatagtaacaaagtgggacatttttgaattgggacaaataatatgaggggcataagctt 209

               
Query: 485 ggct 488
           ||||
Sbjct: 208 ggct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)