XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGTATTCAGTAAATAGTATACACTGAAGACTTTGGAATTGACTTTCTGT
ATTATTTTCACTCTGTTATATAATGATTCACTACAGAATAAACGTCACCA
ATATTTAGTGGGTACTATAAAAATTTTTCATGGCTTGTTAGATTTAATGC
TTCACCTATCTAAATAATTGGGTAATTAAAAAGTATATTTCATATGTAGT
GTGACAAAGCTGGGGAAGCTAAGAACACTTTCATAAAATCTGAGTCTGGG
ATGTGAAGTTCAGCTATCTTTTAGAATGGAGTTTAAAGAACATCATCACT
TACTAGGCAGGGTTTCACCACTGGTAGAAATTGCATTTTGTCTTGATATA
TTATTAACATGCAGATGCTCGCTCAGAAATGTGTTGAGTTCCTGAGATTT
TTACATCTTTCACACTCTGCGACATGATTAACTCACTCATTTGCCATACT
CTGATGACTCCTTCTCTGGCTCCTTCTCTTCCATTATCTAATCTTCCATA
TCTTATTTTTTTTCCTCCTACATGCTTGAGTAATTTAAACAGAAAATTTT
CTGTGTTGAATGATCTCAAGAAATAAATTATTGTTTCTCTATTTGATTGT
CCAGNTTTGATTAAATTGCTGTATGGTGTTGTTTGAGTGAAGAAGCTCTA
AAATCAGGTCCTGCAGGCTATCGTCTGCAACCTGTGAATATAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCCAACACACCAGAAAAGCATGATATGAATTTAAAATCATACC
TCATGATGCTAATGGAGGATTTTAAGAAGGACATAAATAACTCTCTTAAG
GAAATACAAATCAAAAATGAAAAGGGAGGCATTACAACAGAAACTGAGGA
AAACCAATAAAACAAAACAAAACAAAACAAACAAAAATACCATTAGATCC
TACTACAAAAGCTTATAATCAAAAAAACTGGAAAACCTGGATGAAATAGA
AAATGTTCTAGACAGATACCAAGTCCCAAAGTTAAATCAGGAACAAATAA
ATGATATAAACAGTCCCATACACCCTGAAAACACAGAGACAGTCATTAAT
AGTCTCCCTACAACAACAACAACCTAAATCCCAGGAACAGATGGGTTTAG
TGTAGAATTCTATCAGGACTTTAAAGACTTAATACCAATACTCCTCAAAC
TATCCCACAAAATAGAAACAAAAGGTACTCTACCCAATACTTCTATGAAG
GCACAGTTACTTTGATAACTAAACAACATANAGACCCAACAAAGAAAGAG
AAATTCAGACCAATTTCCCTTATAAATATTGATGCAAAAATAATCAATAA
AATTCTTGCAAACTGAATCCAAGAACACTTCAAAAAGATATCCATCCTGA
TCAAGTAGCCTAAGTCCAGGGATTCAGGGAGG

Query= MSMg01no365_h11.b1 MSMg01no365_h11.b1 CHROMAT_FILE:
MSMg01no365_h11.b1 PHD_FILE: MSMg01no365_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:58 2005
         (606 letters)



>mm_chr8_52505041_52506045
          Length = 1005

 Score = 1135 bits (587), Expect = 0.0
 Identities = 599/603 (99%), Gaps = 3/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtattcagtaaatagtatacactgaagactttggaattgactttctgtatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattcttgtattcagtaaatagtatacactgaagactttggaattgactttctgtatta 746

                                                                       
Query: 65  ttttcactctgttatataatgattcactacagaataaacgtcaccaatatttagtgggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttcactctgttatataatgattcactacagaataaacgtcaccaatatttagtgggta 686

                                                                       
Query: 125 ctataaaaatttttcatggcttgttagatttaatgcttcacctatctaaataattgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctataaaaatttttcatggcttgttagatttaatgcttcacctatctaaataattgggta 626

                                                                       
Query: 185 attaaaaagtatatttcatatgtagtgtgacaaagctggggaagctaagaacactttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attaaaaagtatatttcatatgtagtgtgacaaagctggggaagctaagaacactttcat 566

                                                                       
Query: 245 aaaatctgagtctgggatgtgaagttcagctatcttttagaatggagtttaaagaacatc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 aaaatctgagtctgggatgtgaagttcagc-atcttttagaatggagtttaaagaacatc 507

                                                                       
Query: 305 atcacttactaggcagggtttcaccactggtagaaattgcattttgtcttgatatattat 364
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atcactaactaggcagggtttcaccactggtagaaattgcattttgtcttgatatattat 447

                                                                       
Query: 365 taacatgcagatgctcgctcagaaatgtgttgagttcctgaga-tttttacatctttcac 423
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 446 taacatgcagatgctcgctcagaaatgtgttgagttcctgagattttttacatctttcac 387

                                                                       
Query: 424 actctgcgacatgattaactcactcatttgccatactctgatgactccttctctggctcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actctgcgacatgattaactcactcatttgccatactctgatgactccttctctggctcc 327

                                                                       
Query: 484 ttctcttccattatctaatcttccatatcttattttttttcctcctacatgcttgagtaa 543
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 326 ttctcttccattatctaatcttccatatctta-tttttttcctcctacatgcttgagtaa 268

                                                                       
Query: 544 tttaaacagaaaattttctgtgttgaatgatctcaagaaataaattattgtttctctatt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttaaacagaaaattttctgtgttgaatgatctcaagaaataaattattgtttctctatt 208

              
Query: 604 tga 606
           |||
Sbjct: 207 tga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space:   593020
Effective search space used:   593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)