Query= MSMg01no365_i11.b1 MSMg01no365_i11.b1 CHROMAT_FILE:
MSMg01no365_i11.b1 PHD_FILE: MSMg01no365_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:03 2005
(423 letters)
>mm_chr8_49885738_49886560
Length = 823
Score = 756 bits (391), Expect = 0.0
Identities = 415/423 (98%)
Strand = Plus / Plus
Query: 1 tcctgcactccgagcagtgccttcataaaatgagcgagcccatttctgagctctacgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgcactccgagcagtgccttcataaaatgagcgagcccatttctgagctctacgcat 260
Query: 61 caaaaagtaaataaataaaatgtgggagggtgtcagaggcgtttttcttttttaagaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaagtaaataaataaaatgtgggagggtgtcagaggcgtttttcttttttaagaagg 320
Query: 121 gacctttcgccttagctgcgtagtcttcattggagcagagctggcaaacacttctgaccg 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctttcgccttagttgcgtagtcttcattggagcagagctggcaaacacttctgaccg 380
Query: 181 ctgaaaagcgaggcagcggtcatatatgtgaaagggttacctttgaaagacatcacctgc 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctgaaaagcgaggcagcggtcctatatgtgaaagggttacctttgaaagacatcacccgc 440
Query: 241 ttcactgttgtggtcatctgcagaagcttctgccacgaaggaatacaagcccgaccagtg 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcactgcagtggtcatctgcagaagcttctgccacgaaggaatacaagcccgaccagtg 500
Query: 301 ctgccactagtcttgaattggtttacaattatgtgataaatgcgctgaaaaccagtgtga 360
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 501 ctgccactagtcttgaattggtttacaattatgtgataaatgtgttgaaaaccagtgtga 560
Query: 361 attttgaatgtgcttcaaggggcctgcctacttatgtattttctcatatttgagactttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 attttgaatgtgcttcaaggggcctgcctacttatgtattttctcatatttgagattttg 620
Query: 421 ttt 423
|||
Sbjct: 621 ttt 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_i11.g1 MSMg01no365_i11.g1 CHROMAT_FILE:
MSMg01no365_i11.g1 PHD_FILE: MSMg01no365_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:03 2005
(521 letters)
>mm_chr8_50081069_50081989
Length = 921
Score = 951 bits (492), Expect = 0.0
Identities = 513/527 (97%), Gaps = 12/527 (2%)
Strand = Plus / Minus
Query: 1 tttagaaaagtcaggcacgttccatgagggcttaccctaatgacttcattttcataggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tttagaaaagtcaggcacgttccatgagggcttaccctaatgacttcattttcataggac 819
Query: 61 catctacaaagatgttatttctaagtaaggtcaagttcacagggattatgggttggaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 catctacaaagatgttatttctaagtaaggtcaagttcacagggattatgggttggaact 759
Query: 121 tcaacatctctttggaagacacagatctacccagaacggagatgcagtcaaagagtcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tcaacatctctttggaagacacagatctacccagaacggagatgcagtcaaagagtcttg 699
Query: 181 tgatgaacaactgaatgggtagtgtcttcatctgtcttctcttgccagaacaacacac-- 238
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgatgaacaactgaatgtgtagtgtcttcatctgtcttctcttgccagaacaacacacca 639
Query: 239 ----ctttttttgagacattaaagtgaaggagcttatgtgagcagctatgattgcagagc 294
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caagc------tgagacattaaagtgaaggagcttatgtgagcagctatgattgcagagc 585
Query: 295 gatgttctaatgctgaggattttttttaatgaagtttctggaggcttacaagtaaataca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gatgttctaatgctgaggattttttttaatgaagtttctggaggcttacaagtaaataca 525
Query: 355 cggcaagggtttgtgtcgaggagagggcattgctgtttctcacgacagaaaagacaaaga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cggcaagggtttgtgtcgaggagagggcattgctgtttctcacgacagaaaagacaaaga 465
Query: 415 gcagtgagcacaggcttgcacaaaggcttacatgtgtagcanaggcattctgaaagaaac 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 464 gcagtgagcacaggcttgcacaaaggcttacatgtgtagcaaaggcattctgaaagaaac 405
Query: 475 tagcccctctgtctacaccagtggctctcaaccttcccaagtctgca 521
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tagcccctctgtctacaccagtggctctcaaccttcccaagtctgca 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
