BAC Information

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BAC

Clone NameMSMg01-365I19
Chromosome8 (Build37)
Map Location 113,644,991 - 113,645,337
singlet/doubletsinglet
Overlap gene4930402E16Rik
Upstream geneCalb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl
Downstream gene9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365I19.T7 (MSMg01no365_i19.b1)MSMg01-365I19.TJ (MSMg01no365_i19.g1)
ACCAG473478AG473479
length784743
length of high quality
(start - end)
351 (35 - 385)48 (56 - 103)
definitionCHROMAT_FILE: MSMg01no365_i19.b1 PHD_FILE: MSMg01no365_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:04 2005CHROMAT_FILE: MSMg01no365_i19.g1 PHD_FILE: MSMg01no365_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTCT
CTCTCCTATCTGAGGCCCAACAGCCTTCTGTCTCCATCTAAACAGGTTCC
TAGCAGAATGGATGGTATATGGTTATCCCTCTGAAAATGTCTGGGAGTTG
GATTTGCAGCGCTTCGGAGCCCTCCAGAGCAGCCGCACCTTTCTGCGCCA
CCGGGTCATGGAAGTTATGCGTAAGTGTGCTTTTACTCTAATTTTACTGG
GCTCAGCAGTCTTTGTGTCGTTTGATTTATTAGTCAGGGCTTTCCCTTAC
CTCTTTATTAACCATTTTGAATTGGGTTTCTCATCTGTGCCTATTTCACG
TCGGAGGATGGGGATTTATGCCCCACCTGACACTTAGTAGCATTTCCGGC
ACATGGGGTCATGCTAGCAATAGGAAGGACTATACTTGCTAGCTGGCATG
TTGCAGCTTTCTGTGTGCTGCTTGCTCGCAGCCTCCTTCTGTGGCCCTTG
CCGCTACCTCCCTTTCTTCCCTATGCCTTGCCCCCATCGGTTATCTTTTG
CCTTTTTCCCTTCCACCCCCCCTCTTACACTCCCTTGTTCCTTTTTCCTC
CACCCTTTCTTATTATTCTTTAATTCCCCTTCCCCCCACCCCTTTTTTTT
TTTTGCATTCCCTTTTTCACAACTCTTCCCCCCCCCCCTTTTCTTTTCTT
CCCCCTCTTTTCCCATAATTTCCCCTTTTATTATATCCTTTTTTTTTACC
TGCCACCTTATTTTCGCCCCTTTTTTTTTCCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATATATGAGCCTATAGGGGTAATTTTTATCANACTACCACACTC
CACTCCATGGCCCCCGAGAACCTTGAGCCCTACAGTTATCTGACATGGTT
TTACGGCGGGCGCAGAATGTCCGCTACGCGTGTTAGCCGTGTGGCGNAGC
GCAGGGGGCGGAGTGTGGTGGGAGGGCCCCCACGGTGCTTAAAAATGAAA
CCAAACCCCCCGGGTAACCAAAAACCCCTGCCTCAAATTAAAAACACCCT
TTTGAGAACCTTGGGCTTTTTTCAAAGTAATGGAACCGGGGTTTTCCAAG
GTTATACCCCAAAAGGGGGCTCCCCGGGAGCTTCTCAAAAACAATTTAAG
AAGGGGGGAATTTTTAGGGGGTTTTCTTTTTTTTTTTCTTCTTTTATTTT
AAAAAAAATTTTGTTTGGGGGGGGGGGCTCTCCCTCCGGGAAAAAAAAAT
TTTTCTTCACCCCCCCCCCCNATTTCCCCCCCCTCCACAACCCCTCCCAT
AAAAAAAAAATTTTTTTTCCTCCCCTACACAAAATATTNTAAAACACATC
AACACCACACCCCCACCCCCCCANCATCTCCATTCCATAACTAAAAACAA
AACACCCACACCCCCCCCCCACACCCCCTANCCCACTCTTCTTCCCTCTC
CTNCCCACTCCAATATTTTCTTCAGTTTTGGTGTGTGGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_i19.b1 MSMg01no365_i19.b1 CHROMAT_FILE:
MSMg01no365_i19.b1 PHD_FILE: MSMg01no365_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:04 2005
         (351 letters)



>mm_chr8_113644787_113645537
          Length = 751

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctctctctcctatctgaggcccaacagccttctgtctccatctaaacaggtt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctctctgtcctatctgaggcccaacagccttctgtctccatctaaacaggtt 264

                                                                       
Query: 65  cctagcagaatggatggtatatggttatccctctgaaaatgtctgggagttggatttgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctagcagaatggatggtatatggttatccctctgaaaatgtctgggagttggatttgca 324

                                                                       
Query: 125 gcgcttcggagccctccagagcagccgcacctttctgcgccaccgggtcatggaagttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcgcttcggagccctccagagcagccgcacctttctgcgccaccgggtcatggaagttat 384

                                                                       
Query: 185 gcgtaagtgtgcttttactctaattttactgggctcagcagtctttgtgtcgtttgattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcgtaagtgtgcttttactctaattttactgggctcagcagtctttgtgtcgtttgattt 444

                                                                       
Query: 245 attagtcagggctttcccttacctctttattaaccattttgaattgggtttctcatctgt 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 attagtcagggctttcccttacctctttaataaccattttgaattgggtttctcatctgt 504

                                                          
Query: 305 gcctatttcacgtcggaggatggggatttatgccccacctgacactt 351
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcctatttcaggtcggaggatggggatttatgccccacctgacactt 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)