Query= MSMg01no365_k16.b1 MSMg01no365_k16.b1 CHROMAT_FILE:
MSMg01no365_k16.b1 PHD_FILE: MSMg01no365_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:13 2005
(270 letters)
>mm_chr8_63914258_63914927
Length = 670
Score = 476 bits (246), Expect = e-139
Identities = 261/266 (98%)
Strand = Plus / Plus
Query: 5 gaattctgttttcttgaagctttctcagggtccaaagggcctggtcctacttgggtgtgt 64
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtttccttgaagctttctcagggttcaaagggcctggtcctacttgggtgtgt 264
Query: 65 gagctctctagatgcttgctctggtggacaagtcacccttgatctcttctctctttgtct 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagttctctagatgcttgctctggtggacaagtcacccttgatctcttctctctttgtct 324
Query: 125 ttgcttgcttcacatcactcgggtttcagctgagatatttcttagagaaatgtcctggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgcttgcttcacatcactcgggtttcagctgagatatttcttagagaaatgtcctggct 384
Query: 185 gctctatctttcatagtttgtttctttgcccacagtacctcttcatctctgcagctcatt 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 gctctatctttcatagtttgtttctttgcccacggtacctcttcatctctgcagctcatt 444
Query: 245 tcatattcttacagcagggatattac 270
|||||||||||||||||||| |||||
Sbjct: 445 tcatattcttacagcagggacattac 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no365_k16.g1 MSMg01no365_k16.g1 CHROMAT_FILE:
MSMg01no365_k16.g1 PHD_FILE: MSMg01no365_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:13 2005
(557 letters)
>mm_chr8_64074153_64075110
Length = 958
Score = 936 bits (484), Expect = 0.0
Identities = 537/562 (95%), Gaps = 18/562 (3%)
Strand = Plus / Minus
Query: 1 attcaaggccactgtaacagtctaggattaaccttacgccgtccatcttcaaatcggccc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 672 attcaaggccactgtaacagcctaggattaaccttacgccgtccatcttcaaatcggccc 613
Query: 61 actcaggacagggctccccta-cctttctccctctgtggtcccctcctgactgtcacttt 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 612 actcaggacagggctcccctaccctttctccctctgtggtcccctcctgactgtcacttt 553
Query: 120 agttctcttgggtcactgtggagattcaggctttgctttgccgtcaagaactcagtcttt 179
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 552 agttctct--------tgtggagattcaggctttgttttgccgtcaagaactcagtcttt 501
Query: 180 tctctatatcttggcacaatcttcctttatattctgggtggcagatctcccgcttgccga 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 tctctatatcttggcacaatcttcctttatattccgggtggcagatctcccgcttgccga 441
Query: 240 gttctctctgacccagtgctctgtgtctgctgggatagtcacactcacacaaatag-ccc 298
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 gttccctctgacccagtgctctgtgtctgctgggatagtcacactcacacaaatagcccc 381
Query: 299 ccctccatttttagctttctctcacttaggcaaaagcaaaaactacaatcaatcaattaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 ccctccatttttagctttctctcacttaggcaaaagcaaaaactacaatcaatc----aa 325
Query: 359 tcaatcaatcaatcaatacaaagagccagaaagatgtctgggccaatgg-acgagcttca 417
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 324 tcaatcaatcaatcaatacaaagagccagaaagatgtctgggccaa-ggaacgagcttca 266
Query: 418 tttgtttttatactgaagtatgaattgtcctcagagatttcctgtcaactcccttctccc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtttttatactgaagtatgaattgtcctcagagatttcctgtcaactcccttctccc 206
Query: 478 aatagtctgaggagtcattactcacagggtttagtctccctagaagactcacattg--tt 535
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 205 aatagtctgaggagtcattactcacagggtttagtctctctagaaaactcacattggttt 146
Query: 536 tttttttaaagttttttacttt 557
||||||| ||||||||||||||
Sbjct: 145 ttttttttaagttttttacttt 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
