MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-365P02
Chromosome	8 (Build37)
Map Location	18,560,074 - 18,560,409
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC665638, LOC100040466
Downstream gene	Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC665638 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	LOC100040466 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040466
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	Mcph1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244329 MGI:2443308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Angpt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11601 MGI:1202890
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Agpat5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52123 MGI:1196345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040486 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040486
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Xkr5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319581 MGI:2442327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:360217 MGI:2672976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb37 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353320 MGI:2672966
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:360212 MGI:2672972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:360214 MGI:2672974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77674 MGI:1924924
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb34 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:360211 MGI:2672979
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG546038 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546038 MGI:3647173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Spag11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78128 MGI:1925378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244332 MGI:2675345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56519 MGI:1927667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG654452 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654452 MGI:3647175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Defb6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:116746 MGI:2151044
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG574081 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:574081 MGI:3646525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81007 MGI:1933153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27358 MGI:1351612
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Defb54-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:654456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC100040504 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040504
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100040514 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040514
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Defb8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244334 MGI:2654206
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040528 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040528
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100041511 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041511
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 835 ESTs, 7 Proteins

name	Defb7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246080 MGI:2179200
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670326 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins pseudo : _no_value

name	LOC100040466 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258371 GeneID:100040466
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001474724.1

name	Mcph1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37059802 GeneID:244329 MGI:2443308
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : microcephaly, primary autosomal recessive 1 transcript_id : NM_173189.2

name	Angpt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131014 GeneID:11601 MGI:1202890
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiopoietin 2 transcript_id : NM_007426.3

name	Agpat5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127139102 GeneID:52123 MGI:1196345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) transcript_id : NM_026792.3

name	Xkr5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801336 GeneID:319581 MGI:2442327
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X Kell blood group precursor-related family, member 5 transcript_id : NM_176951.3

name	Defb40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120587014 GeneID:360217 MGI:2672976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 40 transcript_id : NM_183039.3

name	Defb37 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129202 GeneID:353320 MGI:2672966
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 37 transcript_id : NM_181683.1

name	Defb38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33942121 GeneID:360212 MGI:2672972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 38 transcript_id : NM_183036.1

name	Defb39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112807196 GeneID:360214 MGI:2672974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 39 transcript_id : NM_183038.2

name	Defb12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384433 GeneID:77674 MGI:1924924
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 12 transcript_id : NM_152802.2

name	Defb34 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33942123 GeneID:360211 MGI:2672979
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 34 transcript_id : NM_183035.1

name	EG546038 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360037 GeneID:546038 MGI:3647173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG546038 transcript_id : NM_001034905.2

name	EG546038 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88501724 GeneID:546038 MGI:3647173
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG546038 transcript_id : NM_001039563.1

name	Spag11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23346552 GeneID:78128 MGI:1925378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm associated antigen 11 transcript_id : NM_153115.1

name	Defb14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33942109 GeneID:244332 MGI:2675345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 14 transcript_id : NM_183026.1

name	Defb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379735 GeneID:56519 MGI:1927667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 4 transcript_id : NM_019728.3

name	Defb6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16905104 GeneID:116746 MGI:2151044
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 6 transcript_id : NM_054074.1

name	EG574081 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778926 GeneID:574081 MGI:3646525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG574081 transcript_id : NM_001025351.1

name	Defb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118200342 GeneID:81007 MGI:1933153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 5 transcript_id : NM_030734.2

name	Defb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114796631 GeneID:27358 MGI:1351612
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 3 transcript_id : NM_013756.2

name	Defb8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129299 GeneID:244334 MGI:2654206
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 8 transcript_id : NM_153108.3

name	LOC100041511 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258391 GeneID:100041511
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 835 ESTs, 7 Proteins product : similar to Mus musculus ribosomal protein L19 transcript_id : XM_001476576.1

name	Defb7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21361233 GeneID:246080 MGI:2179200
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 7 transcript_id : NM_139220.1

name	LOC100040466 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258372 GeneID:100040466
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474774.1

name	Mcph1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37059803 CCDS:CCDS22124.1 GeneID:244329 MGI:2443308
definition	codon_start : 1 product : microcephalin protein_id : NP_775281.2

name	Angpt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982508 CCDS:CCDS22125.1 GeneID:11601 MGI:1202890
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005172 - vascular endothelial growth factor receptor binding [Evidence TAS] GO_process : GO:0001525 - angiogenesis [Evidence IGI]; GO:0048514 - blood vessel morphogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007492 - endoderm development [Evidence TAS]; GO:0016525 - negative regulation of angiogenesis [Evidence IDA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence TAS] codon_start : 1 product : angiopoietin 2 protein_id : NP_031452.2

name	Agpat5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229077 CCDS:CCDS22126.1 GeneID:52123 MGI:1196345
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IDA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0008654 - phospholipid biosynthesis [Evidence IEA] codon_start : 1 product : 1-acylglycerolphosphate acyltransferase-epsilon protein_id : NP_081068.1

name	Xkr5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892765 GeneID:319581 MGI:2442327
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : XK-related protein 5 protein_id : NP_795925.1

name	Defb40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120587015 GeneID:360217 MGI:2672976
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 note : beta defensin 40 product : defensin beta 40 protein_id : NP_898860.3

name	Defb37 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32129203 GeneID:353320 MGI:2672966
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 function : antimicrobial peptide note : beta defensin 37 product : defensin beta 37 protein_id : NP_859011.1

name	Defb38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33942122 GeneID:360212 MGI:2672972
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 function : antimicrobial peptide note : beta defensin 38 product : defensin beta 38 protein_id : NP_898857.1

name	Defb39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112807197 CCDS:CCDS22130.1 GeneID:360214 MGI:2672974
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : defensin beta 39 protein_id : NP_898859.2

name	Defb12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23680955 GeneID:77674 MGI:1924924
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0050829 - defense response to Gram-negative bacterium [Evidence IDA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : beta defensin 12 protein_id : NP_690015.1

name	Defb34 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33942124 GeneID:360211 MGI:2672979
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 function : antimicrobial peptide note : beta defensin 34 product : defensin beta 34 protein_id : NP_898856.1

name	EG546038 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88501725 CCDS:CCDS22133.1 GeneID:546038 MGI:3647173
definition	codon_start : 1 exception : mismatches in translation note : isoform c is encoded by transcript variant c; sperm-associated antigen 11c/h product : sperm-associated antigen 11c/h isoform c protein_id : NP_001034652.1

name	EG546038 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702268 GeneID:546038 MGI:3647173
definition	codon_start : 1 note : isofrom h is encoded by transcript variant h; sperm-associated antigen 11c/h product : sperm-associated antigen 11c/h isofrom h protein_id : NP_001030077.1

name	Spag11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346553 GeneID:78128 MGI:1925378
definition	GO_component : GO:0001669 - acrosome [Evidence ISS]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA] [Evidence ISS]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 note : antimicrobial peptide Bin1b; beta defensin EP2e product : sperm associated antigen 11 protein_id : NP_694755.1

name	Defb14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33942110 GeneID:244332 MGI:2675345
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 function : antimicrobial peptide note : beta defensin 14 product : defensin beta 14 protein_id : NP_898847.1

name	Defb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789929 GeneID:56519 MGI:1927667
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 note : beta defensin-4 product : defensin beta 4 protein_id : NP_062702.1

name	Defb6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16905105 GeneID:116746 MGI:2151044
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0050829 - defense response to Gram-negative bacterium [Evidence IDA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : defensin beta 6 protein_id : NP_473415.1

name	EG574081 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778927 GeneID:574081 MGI:3646525
definition	codon_start : 1 note : beta-defensin 50 product : beta-defensin 53 protein_id : NP_001020522.1

name	Defb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118200343 GeneID:81007 MGI:1933153
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : defensin beta 5 protein_id : NP_109659.2

name	Defb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304997 GeneID:27358 MGI:1351612
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : defensin beta 3 protein_id : NP_038784.1

name	Defb8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982564 GeneID:244334 MGI:2654206
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IDA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy function : antimicrobial peptide note : beta-defensin 8 product : defensin related 1 protein_id : NP_694748.2

name	LOC100041511 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258392 GeneID:100041511
definition	codon_start : 1 product : similar to Mus musculus ribosomal protein L19 protein_id : XP_001476626.1

name	Defb7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21361234 GeneID:246080 MGI:2179200
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 function : antimicrobial peptide product : defensin beta 7 protein_id : NP_631966.1

name	LOC665638 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665638
definition	number : 4 pseudo : _no_value

name	LOC665638 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665638
definition	number : 3 pseudo : _no_value

name	LOC665638 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665638
definition	number : 2 pseudo : _no_value

name	LOC665638 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665638
definition	number : 1 pseudo : _no_value

name	LOC100040486 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040486
definition	number : 3 pseudo : _no_value

name	LOC100040486 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040486
definition	number : 2 pseudo : _no_value

name	LOC100040486 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040486
definition	number : 1 pseudo : _no_value

name	LOC100040504 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040504
definition	number : 1 pseudo : _no_value

name	LOC100040504 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040504
definition	number : 2 pseudo : _no_value

name	LOC100040514 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040514
definition	number : 1 pseudo : _no_value

name	LOC100040514 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040514
definition	number : 2 pseudo : _no_value

name	LOC100040528 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040528
definition	number : 2 pseudo : _no_value

name	LOC100040528 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040528
definition	number : 1 pseudo : _no_value

name	EG654452 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84993757 GeneID:654452 MGI:3647175
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG654452 pseudo : _no_value transcript_id : NR_002878.1

name	Defb54-ps (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:84993764 GeneID:654456
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : defensin beta 54 pseudogene pseudo : _no_value transcript_id : NR_002881.1

name	LOC670326 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258375 GeneID:670326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins product : similar to La ribonucleoprotein domain family, member 1 pseudo : _no_value transcript_id : XR_031974.1

clone name	MSMg01-149E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128F08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-433P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518C21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-357K11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-516I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324L11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-128I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520E11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-482C12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-360K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460G09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533M05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-070E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-208L21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-454N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499K24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-133C04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-460G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422J18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-361L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360K02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-385P10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-134I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-365P02.T7 (MSMg01no365_p02.b1)	MSMg01-365P02.TJ (MSMg01no365_p02.g1)
ACC	AG473777	AG473778
length	1,099	771
length of high quality (start - end)	---	337 (57 - 393)
definition	CHROMAT_FILE: MSMg01no365_p02.b1 PHD_FILE: MSMg01no365_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:36 2005	CHROMAT_FILE: MSMg01no365_p02.g1 PHD_FILE: MSMg01no365_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:36 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ATCATCCCGCCCACTCTATAAACATCATATACGCGAAGAAGCATGGAGGA GACTATTATTGGCGGGGCAGCGCCANCCGGAAGTGTAGACTCACTTAAAA CGATCGCAACAATATACCGCGCAGCGCACTTCATACACACCCCATTGAAC TCCGCGCGCCGTGCCGAATTACCACAACGAGTAATAATTACATATACATA CAACTACACGCAATACTAATACACACAGCCGAGGGAGGCGGGGTGGGACC TCCCATTAACCACTTCGCAGAAAGGTTCCGTTACAAATTGAAGGGCGGCC GACCGCAATCAAGGACAATCGCCCACATGGACTNCGCCCGCGGGGTTTCC GTGGAGTATGAGTCCGCTGCGTACGGCGAAATGTACCGCGTTGCCGGCCT TCGGAGTGAGATGTTACGCTCGCGAGCAAGGACGAGGTAAAATGTCAACG CACTCACGAGCGCCATAAATATCAACCTTCCCATACCCGAAATAATATGC ACATACCACAAAAAGCCAATAAACACGTACGCCCCTCCCGTAATAATAAA TACCATGAGCGTACGCCAAAGTGATAGGTCGTGACGCACGCCTTAGCCGT ATTTACACGATTTCCATGCGCACGGCGCTCGATATACGGCATTATTAATA GGTGATAAACACGTACGCCGCAATGTGATGACGTCCGGGCGGCGCGATAT CGCGCCCTATTATTAACGCCAATTATGTACAACCGGGCCTCCGGCCCAGT TATAAGCATATAACGAATAACGACGCGACCGTGCGCGTAAGCGGACGCCA ATACAAATACATTTGCAGCAGAGACGTGTATTTAACAACTACTTATATAC CCGCGCAGGACGGGTGCCGTAGCGACGTGGATTATATATTACACGCACCA TGTGTGCGTATACACAAAGTAACCGATTAGCGATCATGAAAAACTCCTAT AGCCTGTTAATTTCGCCGCTCGAAGCCCCGCGTTATAGCACCAACCGCCC AAACCTACATGCCATGATATCACGCTGCTGATAGCACGAGTGAATCGCGC GCGGATACAGTAGGAGATGAACTTAGACGCTCACGCATAATATAACCGG	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXAAACAGAGGCAAGTTATTGAGTCATGGTTGTGTTTGGGGTAGAA TGTAGGGCCATGTGTGTTCAGTAAGCATTCCTCCACAGAGACAACCCACA ACTCACAGCAGATTTACTGTTAAGAATTTATACATTAATAGACAGTTTTG TTATTATCCAATCTATATACTGATTGTGTATCAGATGATAAAATACGTTT TCTCTGTACTATAGACTGTTCAGTATTTTAAGTAATATGAATCTTGAAAA ATATTTTTTTTAAAAAATATTGTCTGGAGATGAAATTATGGTGTTTGTAG GGGAACTGGAGTAACTGGAGATTGCGAGATGATTTGTGCTCATAACCCCC CCCAGCAAGTTCTCCTATTTGTGGATCTTACATTTTATATAAAGTCCATC TTCACTTCCTCCCAGATTAGACTCACGGACACTCTCTATATCGTACTGAT CATTTCAGACGGTACTATACCATTCCTACCCTTTTTGTACTTCTATACTG CTTATCCTTGTGACAGACAGTCTTTCTCCTTCCTTTCTCTAGTCTGTGCT ATTATGACTATGGCTCTCTTTTGCTGGAGTTTCATTTGTTCCTCGTTTTC CTTCCGTATTGGTTGACATTCCTCCCATTTGTCTTTGTCCTTTCCCCTCT TATTCCTATCCCCCTCTCGTCGTCTTTCCCCTTGCTTTATATCGCGGCAA TTACCCCTTTTATCTTCTCTN
quality values	Open. Hide. 10 10 10 10 9 9 10 9 9 9 10 8 8 6 6 8 6 6 8 6 9 8 8 8 8 8 10 8 8 8 8 8 6 6 6 6 6 6 8 8 6 6 6 6 6 6 6 8 8 6 7 8 8 9 9 8 8 6 6 6 6 8 8 8 8 13 9 10 10 10 14 8 8 8 3 0 3 8 9 13 10 9 9 8 8 8 11 10 8 9 9 8 13 12 8 8 8 15 15 11 10 10 10 10 10 10 12 11 11 8 10 10 8 8 8 10 10 10 11 6 6 6 6 6 8 8 8 8 6 6 8 8 11 11 11 11 11 12 12 14 14 11 11 9 9 9 8 8 8 8 8 8 8 8 8 8 10 9 9 9 8 6 6 8 8 8 9 9 9 9 9 10 10 10 8 8 6 7 8 6 6 6 8 10 10 8 8 8 10 10 10 10 10 10 10 8 8 6 6 6 6 8 8 10 11 10 8 8 8 8 8 8 8 9 6 6 6 7 6 6 8 8 8 6 6 6 6 6 8 6 6 6 6 11 10 10 8 8 8 8 8 8 11 10 10 10 11 10 13 10 12 8 8 8 8 8 8 9 9 9 12 8 8 8 8 8 8 7 6 8 8 8 6 6 8 8 8 8 8 8 6 8 6 6 8 8 11 11 11 8 8 8 8 8 8 8 8 6 6 10 8 8 8 8 8 8 8 6 6 6 6 10 8 9 9 9 8 10 10 11 7 6 6 6 8 8 8 10 10 11 8 8 3 0 3 8 8 8 8 11 11 11 14 11 11 11 9 9 7 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 7 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 9 8 8 8 6 8 6 6 8 10 15 13 10 10 8 8 6 6 6 6 8 8 8 6 6 8 8 8 10 10 8 8 8 8 8 8 8 8 8 10 8 6 6 8 6 8 10 10 10 11 11 8 8 8 8 8 8 8 12 14 13 12 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 9 9 9 10 13 10 8 8 10 10 8 8 8 8 8 8 8 8 6 6 6 7 6 7 8 8 11 8 8 6 6 8 8 8 6 8 8 10 12 12 11 13 11 11 10 10 10 10 8 8 8 11 12 8 8 6 6 8 8 8 8 8 8 10 10 10 10 8 8 8 8 10 13 11 9 9 11 11 11 11 13 10 10 10 10 8 8 8 8 8 8 10 10 11 10 10 8 8 8 8 8 8 10 10 10 11 11 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 9 9 9 10 8 9 9 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 10 8 8 8 8 8 8 8 8 12 8 8 8 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 6 6 8 8 8 8 6 6 6 6 6 6 10 10 8 8 8 8 6 6 8 6 8 8 10 8 10 10 10 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 8 11 9 9 10 9 8 8 8 8 8 8 8 8 8 9 8 8 10 12 10 10 8 7 6 8 8 10 10 8 6 8 6 6 8 8 8 8 10 10 10 10 9 6 6 6 6 10 10 8 8 8 8 8 9 10 13 9 9 10 9 9 9 10 10 8 8 8 8 8 8 8 8 9 9 9 6 6 6 6 6 8 10 8 8 8 8 8 8 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 15 10 10 7 6 6 7 10 9 7 8 8 8 8 10 10 7 6 6 6 8 8 7 6 6 6 8 8 9 9 9 9 11 10 10 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 10 10 10 8 6 6 6 6 6 6 6 6 8 8 8 8 10 8 11 11 10 10 10 10 10 10 13 10 10 8 8 8 8 9 9 8 8 8 8 8 8 11 11 8 8 6 6 8 10 10 8 8 8 8 6 6 8 8 8 8 10 8 7 8 8 8 8 8 9 7 7 7 9 7 10 8 8 9 10 9 8 10 8 8 8 8 9 9 7 8 6 6 6 8 8 8 6 6 8 8 8 7 7 8 10 7 6 6 8 7 7 7 10 10 10 6 6 6 6 6 8 6 6 6 6 6 10 8 11 8 8 8 8 10 8 10 9 9 6 6 6 6 8 6 6 6 6 7 6 8 6 7 6 6 6 6 6 8 7 10 8 6 6 8 11 11 12 7 7 7 8 8 7 7 6 6 8 8 8 8 8 8 10 8 8 9 14 10 8 6 6 6 6 6	Open. Hide. 29 32 37 37 37 37 31 31 37 37 37 37 11 9 7 8 7 7 6 8 8 10 10 10 11 11 11 21 23 25 28 28 31 31 31 37 37 25 21 8 10 6 6 6 7 7 11 11 11 17 15 25 27 28 23 19 15 19 19 34 39 53 53 53 57 57 57 57 57 57 57 53 53 53 53 48 43 48 48 42 39 41 57 46 54 54 57 57 57 57 48 48 43 43 39 47 37 37 35 42 42 39 42 43 54 59 57 47 47 47 47 54 57 57 57 57 57 47 44 44 57 57 57 59 57 54 54 57 57 57 59 57 57 50 57 50 54 57 57 57 47 43 43 37 43 43 52 52 57 54 50 50 57 52 52 57 57 57 57 47 47 47 50 50 51 57 57 57 52 59 57 57 52 52 52 57 57 68 57 57 57 57 52 52 52 57 57 57 52 52 52 52 57 57 68 59 57 57 57 57 57 57 59 59 68 68 57 57 57 48 48 50 57 57 57 59 59 59 57 57 57 57 57 57 57 54 54 57 44 44 40 36 28 36 44 57 57 68 57 57 57 54 54 57 57 57 57 57 57 57 68 68 68 68 68 59 59 59 59 57 48 48 43 43 43 47 46 43 43 43 42 42 43 43 43 47 59 59 59 48 48 48 48 48 48 39 43 43 43 43 46 47 48 48 47 34 28 18 12 12 12 12 13 13 33 28 43 59 47 39 39 47 47 47 35 37 37 43 43 57 59 48 48 43 47 39 39 35 35 35 39 39 43 43 43 43 43 48 43 43 43 43 41 41 41 39 30 32 30 30 30 30 30 37 44 44 39 32 32 39 37 46 42 42 36 42 33 41 25 28 28 28 28 14 17 17 30 30 39 39 39 39 43 36 34 28 28 23 28 22 12 10 16 16 10 10 10 11 12 14 11 13 11 12 12 15 12 10 10 13 13 22 23 28 18 13 13 18 28 24 17 17 19 14 13 11 11 9 10 13 13 19 22 24 30 32 37 22 24 13 13 10 12 10 8 8 8 8 8 8 10 13 13 14 11 13 8 8 8 8 10 12 12 8 8 8 8 8 9 9 8 11 16 11 13 13 18 18 16 11 9 9 8 10 10 10 8 10 11 11 11 18 21 20 21 10 10 10 10 10 10 11 8 8 9 9 9 11 10 8 10 8 7 11 10 8 8 8 12 12 8 8 8 8 11 8 8 8 11 13 11 11 10 8 8 8 10 8 12 15 18 13 10 8 8 8 8 8 10 10 10 12 9 9 9 9 8 8 8 8 8 8 10 8 8 8 8 8 8 9 10 10 10 10 6 6 8 15 12 10 10 10 11 9 9 7 7 6 6 8 11 8 8 10 11 11 15 13 8 8 8 10 10 12 9 9 10 12 10 10 10 10 6 8 6 6 8 8 9 12 15 10 12 8 10 8 8 8 8 10 15 8 8 8 9 9 9 11 10 15 14 8 8 8 8 8 8 9 8 8 8 8 8 10 11 13 10 10 10 7 7 12 12 15 10 10 9 12 9 12 11 8 8 8 12 8 9 9 10 12 13 14 14 11 11 10 8 11 11 11 8 9 9 10 9 8 8 6 6 6 6 8 8 10 10 10 6 6 8 8 8 8 11 11 8 8 6 6 8 8 8 8 8 6 6 11 8 11 17 17 16 15 10 8 8 8 8 10 16 11 8 8 6 6 6 6 8 8 8 8 10 12 12 11 15 15 16 18 13 17 11 11 11 17 12 12 15 11 11 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no365_p02.g1 MSMg01no365_p02.g1 CHROMAT_FILE:
MSMg01no365_p02.g1 PHD_FILE: MSMg01no365_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:36 2005
         (337 letters)



>mm_chr8_18559970_18560706
          Length = 737

 Score =  574 bits (297), Expect = e-168
 Identities = 327/337 (97%), Gaps = 2/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacagaggcaagttattgagtcatggttgtgtttggggtagaatgtagggccatgtgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 aaacagaggcaagttattgagtcatggttgtgtttggggtagaatgtaaggccatgtgtg 381

                                                                       
Query: 61  ttcagtaagcattcctccacagagacaacccacaactcacagcagatttactgttaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcagtaagcattcctccacagagacaacccacaactcacagcagatttactgttaagaa 321

                                                                       
Query: 121 tttatacattaatagacagttttgttattatccaatctatatactgattgtgtatcagat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 tttatacattaatagacagttttgttattatctaatctatatactgattgtgtatcagat 261

                                                                       
Query: 181 gataaaatacgttttctctgtactatagactgttcagtattttaagtaatatgaatcttg 240
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gataaaatgtgttttctctgtactatagactgttcagtattttaagtaatatgaatcttg 201

                                                                       
Query: 241 aaaaatattttttttaaaaaatattgtctggagatgaaattatggtgtttgtaggggaa- 299
           ||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 200 aaaaacattttttaaaaaaaatattgtctggagatgaaattatggtgtttgt-ggggaaa 142

                                                
Query: 300 ctggagtaactggagattgcgagatgatttgtgctca 336
           ||||||||||||||||||| |||||||||||||||||
Sbjct: 141 ctggagtaactggagattgtgagatgatttgtgctca 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information