BAC Information

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BAC

Clone NameMSMg01-366E11
Chromosome8 (Build37)
Map Location 9,613,121 - 9,613,364
singlet/doubletsinglet
Overlap geneTmem28
Upstream geneEfnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366E11.T7 (MSMg01no366_e11.b1)MSMg01-366E11.TJ (MSMg01no366_e11.g1)
ACCAG474030AG474031
length775786
length of high quality
(start - end)
244 (75 - 318)240 (74 - 313)
definitionCHROMAT_FILE: MSMg01no366_e11.b1 PHD_FILE: MSMg01no366_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:05 2005CHROMAT_FILE: MSMg01no366_e11.g1 PHD_FILE: MSMg01no366_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGCTCTTCCATTTACAAGAGCTACGCATTACCAACTGACCCG
TATCAACAGTCCCTGTACATACACTATTTTATTGACAAAAACTGTGCCCA
GGAAGATCAGGTGCCCCTTTCCTCCTCGGGGTTTCATTGGCAGAATGTAG
AAATGGCATGTATGCACTGTTCTACAGACTGTCTACTGTGCTCAGTAGTG
TTAACCCTTCAGGAAAAGAAGGAAAATAACCATGGACCAACTCTTAAAAT
GTGGTGCTAGCAAAACTGTATTTTTATCCACATGTAGACAGGATGAAAAC
TTGATCTCTCTCTCTCTTAAGTTATACAGAAGTCAACTTTTAAAAATATA
CAGTATTTGAAACAGAAAATACAAGAGCTGAGCAGTGGTGGTGTATGTCT
TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGG
CCAGCCTGGTCTACAAAGTTCCAGGACAGCTATGGCTACACAAAGAAACC
CTGTCTGGAAAAAACAAACCAATCAACTAACAAATACTAGAAGAAAAAAT
GGGGGTGGTGGTACTTTAACTATGGAAATGAAAAGTGGCTTCCACACGAT
GATTCTAACAGGCCACGTAAACCAAATTAAAAAACGGCCTCAACGTAATG
GCTTAAATTAATTATTTTTTCCCACCAAAAAAACGGAAAAAACCTTTTAA
ATTAATTCTCTACAATATGGGCCAA
CTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCGCTCTGTATCCCATTTT
TAAAATTGGATCGTTTGGATTGTTGGTGTCTAACATGTTGAGTTCTTCAT
ATATTTATTTTAGTTACTAGCCCTCTGTCAGATTTAGAGTTACTGAAGAT
CTTTTCCCAATCTGTAGGTTGTCATTTTGTCCTAATGATGGTGTCCTTTG
ACTTACAGAATCTTTTTAGTTTCATAAGTTCCCATCTATTAATTTTTGAC
CTTAGTGTCTGACCTTTTGTTGTTCTGCTCAGAAAGCTGTCTCCTGTGCT
GATAAGATCTCACACCGGCAAATGTTTCATCAACATCTCTTGTCCATGAA
ACTCAGTGTCACTGTGGCTCCCTGTGTGCATGCTTCCAGTTCAGGTGGGA
ATGGACTAACATTCCTCTCAGGACATCTGCCTCTTTGTATCATCTCTCAG
TGGTGATGAAAGCAAGGTATAGATGGGAGATGCATCAGTGTATTCTGATT
TGATGCCTGTCTGTAGTGGCCAAGCCTGTGATCCTTTCCCTTCTTCCCCT
CGAGAAGGATCTCTAGGGACTTCCCTTCCTGTTTCACCTCTAAGTTTTTA
AATGTTTGGCCAAAATTGGTGGGAACCATTTGGGGGGTAATTACACTTTT
TCTTGTGTGCGACATCCCCCCCTGTTTTTTTTTTTATCCACGTACTTGCT
CACCTGGTTTTTTTATTTTTGTACCTCAAGGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_e11.b1 MSMg01no366_e11.b1 CHROMAT_FILE:
MSMg01no366_e11.b1 PHD_FILE: MSMg01no366_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:05 2005
         (244 letters)



>mm_chr8_9612921_9613564
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagctacgcattaccaactgacccgtatcaacagtccctgtacatacactattttattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagctacgcattaccaactgacccgtatcaacagtccctgtacatacactattttattg 260

                                                                       
Query: 61  acaaaaactgtgcccaggaagatcaggtgcccctttcctcctcggggtttcattggcaga 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 acaaaaactgtgcccaggaagatcaggtgcccctttcctccttggggtttcattggcaga 320

                                                                       
Query: 121 atgtagaaatggcatgtatgcactgttctacagactgtctactgtgctcagtagtgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtagaaatggcatgtatgcactgttctacagactgtctactgtgctcagtagtgttaa 380

                                                                       
Query: 181 cccttcaggaaaagaaggaaaataaccatggaccaactcttaaaatgtggtgctagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttcaggaaaagaaggaaaataaccatggaccaactcttaaaatgtggtgctagcaaa 440

               
Query: 241 actg 244
           ||||
Sbjct: 441 actg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)