BAC Information

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BAC

Clone NameMSMg01-366G09
Chromosome8 (Build37)
Map Location 126,746,069 - 126,951,712
singlet/doubletdoublet
Overlap geneGalnt2, Pgbd5
Upstream geneCdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
Downstream geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366G09.T7 (MSMg01no366_g09.b1)MSMg01-366G09.TJ (MSMg01no366_g09.g1)
ACCAG474121AG474122
length787804
length of high quality
(start - end)
243 (77 - 319)409 (76 - 484)
definitionCHROMAT_FILE: MSMg01no366_g09.b1 PHD_FILE: MSMg01no366_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:14 2005CHROMAT_FILE: MSMg01no366_g09.g1 PHD_FILE: MSMg01no366_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,746,069 - 126,746,311)(126,951,344 - 126,951,712)
sequence
NNCCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGC
GGAATTCTTTAGCTTACACCAAGAAGATAAAGCATTTCTCATTCACAGCA
CAAGTCGAGAAATTTCTGGTCAGGCACAGAAGGTGGTAACCATCATGCCT
TGTGTCACTAAGAGCTGCTAACAGGGAGACATTAAAGTATCCCCCTTATG
AGCTCTGGCCACAGCAGCTGCTGGGAGCACAGTAACACCTGGGAAGGACA
TTTTAATATCTTGACAAAAGTCTCTGTGTAAACATGGCTTAGATTCCATG
GGGGGAGATTTCTGATTGCTTGTTTCTGTGCTCGATATTTTTCTGGTCCC
AGAGCCTAGAAATGTGGCCTGGGCAGTCAGTCTGAAGACTTGAGCTCTAC
CTCAGCACCCAGGGGAAAAGCCAGGTGTGGTGACATGTCTTTGAAATCAC
AGCATGGGGACAGTGAAGGCAAGTGAAACCTTCATACCTATTGTCCAGCC
AACCTACCCAAATTGGGGAATTTCAGGTTCCAGTAACAGACTTGTCTACC
AATTTGAGGTTGATCTTTGTTTTTCCCCAGGGTGGAGTGGAACCCTATTC
CTATCCCCTCAGAAATTTTTGTTTCTATTTCTACCATCCTAATTTTTACC
CACTTCCTCCTTAATAATATCCTTAAAGGGGGTAAAAATTTCACCACACC
CCATTCCCAGGTTCCTTCGCCATTTGTTTTTTTAACTCCTCTTCTCCCCG
TTCCTCCAAATTTTGTTCTCCATTTTTCTTTTCTCCT
NTCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTTGATAGCAGCTGGGATGCAGA
GAAAGAACGGAGATGGGGGGACAGGGACAAGAAATGCTCCTCGGAAGCAC
GCCTGCAATGACCTGCCTTCGGTCAGGCTACCTTCAGACTTCATATTTCC
ACCTTCCTAGAGAGCCGCCAGCTTGTGATCCATCAGTGGGTGTCTTAGGG
TTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGACA
ACATTTAATTGGGGCCCCGTTTATTGGTTCAGAGGTTCAATCCATTATCA
TCAAGGCAGGAACATGGCAGTGTCCAGGCAGGCATGGTACAAGAGGAGCT
GAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGACTACTGGCTTCCA
CATCTCTACTCCAACAAGGTCACATCTTCTAATAGTACCACTCCCTGGGC
TGAGCATATTGCAAACCATCACAGTGTGTGAAGGTTCTTGGCTTTGGAGA
CCAAAGTTTTGGGGGGTATTGTTGTACTTTTCTCCCCTTGGCCTTTTAAA
TTGGAAAACACATTTGTTGGTTGAAAAAAAATGTTTTACTAATTTCTAAA
ATTTCTCTGTACCATCCCTTGAGGCGTTAATTGGACATTTTTTCTATCCC
CTTTACCAATTTTATCACCCCCGCCACCACAGCGAAGTTTTTTTCTTATA
GGCTGCGATTCCGATATCCTTCTTTTTTTTTCTCCTTTCTCCCCCCCTTC
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_g09.b1 MSMg01no366_g09.b1 CHROMAT_FILE:
MSMg01no366_g09.b1 PHD_FILE: MSMg01no366_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:14 2005
         (243 letters)



>mm_chr8_126745869_126746511
          Length = 643

 Score =  416 bits (215), Expect = e-121
 Identities = 236/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaagcatttctcattcacagcacaagtcgagaaatttctggtcaggcacagaaggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ataaagcatttctcattcacagcacaagtcgagaaatttctgggcaggcacagaaggtgg 260

                                                                       
Query: 61  taaccatcatgccttgtgtcactaagagctgctaacagggagacattaaagtatccccct 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||| |||  |||
Sbjct: 261 taaccatcatgccttgtgtcacgaagagctgctaacagggagacattaaaggatcttcct 320

                                                                       
Query: 121 tatgagctctggccacagcagctgctgggagcacagtaacacctgggaaggacattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgagctctggccacagcagctgctgggagcacagtaacacctgggaaggacattttaa 380

                                                                       
Query: 181 tatcttgacaaaagtctctgtgtaaacatggcttagattccatggggggagatttctgat 240
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 381 tatcttgacaaaagtctctgtgtaaacatggcttagattccaaggggggagaattctgat 440

              
Query: 241 tgc 243
           |||
Sbjct: 441 tgc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no366_g09.g1 MSMg01no366_g09.g1 CHROMAT_FILE:
MSMg01no366_g09.g1 PHD_FILE: MSMg01no366_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:14 2005
         (409 letters)



>mm_chr8_126951344_126952152
          Length = 809

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttgatagcagctgggatgcagagaaagaacggagatggggggacagggacaagaaat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 accttaatagcagctgggatgcagagaaagaacggagatggggggacagggacaagaaat 310

                                                                       
Query: 61  gctcctcggaagcacgcctgcaatgacctgccttcggtcaggctaccttcagacttcata 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 gctcctcggaagcacgcctgcaatgacctgccttctgtcaggctaccttcagacttcata 250

                                                                       
Query: 121 tttccaccttcctagagagccgccagcttgtgatccatcagtgggtgtcttagggtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttccaccttcctagagagccgccagcttgtgatccatcagtgggtgtcttagggtttta 190

                                                                       
Query: 181 ctgctgtgaacagacaccatgaccaaggcaactcttataaggacaacatttaattggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctgctgtgaacagacaccatgaccaaggcaactcttataaggacaacatttaattggggc 130

                                                                       
Query: 241 cccgtttattggttcagaggttcaatccattatcatcaaggcaggaacatggcagtgtcc 300
           |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cccgcttacaggttcagaggttcaatccattatcatcaaggcaggaacatggcagtgtcc 70

                                                                       
Query: 301 aggcaggcatggtacaagaggagctgagagttctacatcttcatctgaaggctgctagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aggcaggcatggtacaagaggagctgagagttctacatcttcatctgaaggctgctagca 10

                    
Query: 361 gactactgg 369
           |||||||||
Sbjct: 9   gactactgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)