Query= MSMg01no366_l14.b1 MSMg01no366_l14.b1 CHROMAT_FILE:
MSMg01no366_l14.b1 PHD_FILE: MSMg01no366_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:39 2005
(492 letters)
>mm_chr8_61306402_61307293
Length = 892
Score = 851 bits (440), Expect = 0.0
Identities = 479/492 (97%)
Strand = Plus / Minus
Query: 1 ggcatcttttgtttctgtgaatgcaaaggcagagcagactctctgttactatgccagtaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 ggcatcttttgtttctgtgaatgcaaagacagagcagactctctgttactatgccagtaa 499
Query: 61 gtgttttatcagtcactcagcctgtgccttttataattctatccttcctcttctctattt 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct: 498 gtgttttatcagtcactcagcctgtgccttttataattctatccttccgcttccctatgt 439
Query: 121 ttttccatttgcatttccaccattaacaggtcttaacttgattattgttccctgtcttcc 180
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 438 tcttccatttgcatttccaccattaacaggtcttaccttgattattgttccctgtcttcc 379
Query: 181 ttagtcatatagattataatcaattaattattaccctagacattttatatgtgatgctat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 ttagtcatatagattataatcaattaattattaccctagacattttatatgtgaagctat 319
Query: 241 ataatcttattttgaactgctcactagtcatgctttttgtctctttaatagtactatgac 300
|||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ataaccccatttggaactgctcactagtcatgctttttgtctctttaatagtactatgac 259
Query: 301 agctaagaaacattccacttttacattttgtcacacacatttactttaaatgtgaccctt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 258 agctaagaaacattccacttttatattttgtcacacacatttactttaaatatgaccctt 199
Query: 361 aatttaaaatgattttatattttattttcatgctttttatttagttaatgcaatattcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatttaaaatgattttatattttattttcatgctttttatttagttaatgcaatattcaa 139
Query: 421 attcaaatatatttttatcatattcttaccattccctaagtccttccatatccatttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 attcaaatatatttttatcatattcttaccattccctaagtccttccatatccatttttc 79
Query: 481 ctccctccctac 492
||||||||||||
Sbjct: 78 ctccctccctac 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_l14.g1 MSMg01no366_l14.g1 CHROMAT_FILE:
MSMg01no366_l14.g1 PHD_FILE: MSMg01no366_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:39 2005
(497 letters)
>mm_chr8_61136118_61137018
Length = 901
Score = 903 bits (467), Expect = 0.0
Identities = 492/501 (98%), Gaps = 4/501 (0%)
Strand = Plus / Plus
Query: 1 tgcattagcatct--gtgggaagacttttggcatggctattgtccttttctggccagttg 58
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcattagcatctctgtgggaagacttttggcatggctattgtccttttctggccagttg 260
Query: 59 tttcagaagtattttgtaaaggtaaacaactattacacacgaaactaaataattatagac 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcagaagtattttgtaaaggtaaacaactattacacacgaaactaaataattatagac 320
Query: 119 attaaatttacttttgatatatttttctgtactcatgtcatatgagaagtaattaagtat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaatttacttttgatatatttttctgtactcatgtcatatgagaagtaattaagtat 380
Query: 179 ccatttcatccccttttatgtttgactcattgtatttcatgcttattatatttctttatt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatttcatccccttttatgtttgactcattgtatttcatgcttattatatttctttatt 440
Query: 239 taatatattcatacatccgtctatatgctttattgtgtcatatatgtcatttattataat 298
||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 taatagactcatacatccgtctatatgctttattgtgtcatatatggcatttattataat 500
Query: 299 ttt-aagtgtatgtatttttattttcaaacatttt-cttatgaaatgcctgttagtttct 356
||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 501 ttttaagtgtatgtatttttattttcaaacatttttcttatgaaatgcctattagtttct 560
Query: 357 ctttaaatctctctgttgcttattagtaatgcttagctatcataagttttttgattcttt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttaaatctctctgttgcttattagtaatgcttagctatcataagttttttgattcttt 620
Query: 417 attttcgtttaacattagaatctcacatagagatcctatgtatgtttttcagttacataa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttcgtttaacattagaatctcacatagagatcctatgtatgtttttcagttacataa 680
Query: 477 tacacacagtgaaatatgtcc 497
|||||||||||||||||||||
Sbjct: 681 tacacacagtgaaatatgtcc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 901
Length adjustment: 10
Effective length of query: 487
Effective length of database: 891
Effective search space: 433917
Effective search space used: 433917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
