BAC Information

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BAC

Clone NameMSMg01-366L18
Chromosome8 (Build37)
Map Location 61,938,303 - 61,938,812
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366L18.T7 (MSMg01no366_l18.b1)MSMg01-366L18.TJ (MSMg01no366_l18.g1)
ACCAG474378AG474379
length821764
length of high quality
(start - end)		49 (81 - 129)510 (80 - 589)
definitionCHROMAT_FILE: MSMg01no366_l18.b1 PHD_FILE: MSMg01no366_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:40 2005CHROMAT_FILE: MSMg01no366_l18.g1 PHD_FILE: MSMg01no366_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCCANATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGC
GACCGCGGAATTCTCTGGGTTCCTTCTCATTGTTTGTTTGTTTGCTTGTT
TGTTTTTTATTTTTCACTTTTTTTTGACTGGGTTGTTTGGGTTTTTTCGG
CGCGTGCTCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCNCCCCAACTA
CTAACCACAACCCCCCCTACCCCACCCCCCCCCCTACCTCTCTCCCCCTC
CACCCCCCTTCCCCAACCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCC
TCCACACCCACCCCCTCCCCCCTTTCTTCTTCCATCCACCCCCCCACCCC
CCCCAAATCTCCCCTCCTCCCCCCCCCTCCCCCCAAACCCCCAAACCCCC
CCCCCTCTACCCACCTACCCCCACCCCCCCCCCCCCCCCTTTCCCCCTAC
CCCCCCCCACCACCCACCCCACCCACTCCCTTCCACCCCCCCCCCCACCC
CCCCCACTCACCCCCCTTCAAACCCCCTACCCCCCCCCCCCCCCACCACC
CCCCATACCCCCCCTATCCCCACCTTACCCCCACCCCCCCCCCTCCCCCA
CCCTTCCCCCCTCCCCCCCCCACCCCCCCACCCCCCCCCCCCCCCCACCC
CCACACCCCCCCTCCCCTACCCCCCCCCCACTATCCCCCACCCCAACTAC
ACCCCCTCCCTAATTTCCCCCCACCACCTACATCACCCCCACTCACCCCC
CCCCACCCACCCCCCCCATAAATCCCCCCCCCCCCCCCCCCCCACCCCTC
TCCCCCCCCCTCCCCCTCCCN

NNNNTTCGATGCTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCTTTTCTTATTTTGCT
TTTGTAAGGCATTTGACTGTAATTGTGTATATTTACGGGATAAAACATGA
AGTTTTGAACTTGCACACCTCAAGCAAATATCCAGTCAAGCTAATTAATA
TATTAATCACCTCAGTAATAGTCCTTGTGTTTGGATCCAGTAAATTAAAA
ATGTGATATTTTAGCAAGTGTGGGATATTTGATGTGTAGTTATTAACTGT
CATTGCAATGCAGCTCAGCAGTCATCATAACGTGTTCTCTCAATGTAAGG
AAAAGGGTCACCAGGCTCAATGAAATGTCAGGAATAGCAAGACGTGTATT
TTTTCACTTACCTGTGCTGTACAGAAGGAGGAAATCTGATAGGAAAGGAA
AATAAAATGGTGTTTAGCAGAATCTGAGTGTAAGAAGGCACAATGGGAAA
ATGTGATTAAAGACCTGCCCTCTCTTCCTTATTTTTAAAATTTATTTTAA
CTAAAGTAGAATTATACCACTTCTTCTGTTTCCTTCCAGGGATATATTTA
CTGTAGCCCAGCTCTGGGGGAGTTTAAAATCCAAAGACAGATGTTTGAAA
TAGGCCGAAGAAGACCCAAAGTACAGTTCACACCCTCCTGGCTGAAGAAC
GCTCAGGCCCCTTTTATTTTGTAATCTATTTTTTTCCCACGGGAAAAGGT
TTTATATTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_l18.g1 MSMg01no366_l18.g1 CHROMAT_FILE:
MSMg01no366_l18.g1 PHD_FILE: MSMg01no366_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:40 2005
         (510 letters)



>mm_chr8_61937906_61938815
          Length = 910

 Score =  895 bits (463), Expect = 0.0
 Identities = 499/511 (97%), Gaps = 2/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcccttttcttattttgcttttgtaaggcatttgactgtaattgtgtatatttacggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 907 attcccttttcttattttgcttttgtaaggcatttgactgtaattgtgcgtatttacggg 848

                                                                       
Query: 61  ataaaacatgaagttttgaacttgcacacctcaagcaaatatccagtcaagctaattaat 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 847 ataaaacgtgaagttttgaacttgcacacctcaagcaaatatccagtcaagctaattcat 788

                                                                       
Query: 121 atattaatcacctcagtaatagtccttgtgtttggatccagtaaattaaaaatgtgatat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atattaatcacctcaataatagtccttgtgtttggatccagtaaattaaaaatgtgatat 728

                                                                       
Query: 181 tttagcaagtgtgggatatttgatgtgtagttattaactgtcattgcaatgcagctcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttagcaagtgtgggatatttgatgtgtagttattaactgtcattgcaatgcagctcagc 668

                                                                       
Query: 241 agtcatcataacgtgttctctcaatgtaaggaaaaggg-tcaccaggctcaatgaaatgt 299
           |||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||
Sbjct: 667 agtcatcaaaacgtgttctctcaatgtaaggaacgggggtcaccaggctcaatgaaatgt 608

                                                                       
Query: 300 caggaatagcaagacgtgtattttttcacttacctgtgctgtacagaaggaggaaatctg 359
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 607 caggaatagcaagacgtgtattttt-cacttacctgtgctgtacagaaggaggaaatctg 549

                                                                       
Query: 360 ataggaaaggaaaataaaatggtgtttagcagaatctgagtgtaagaaggcacaatggga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ataggaaaggaaaataaaatggtgtttagcagaatctgagtgtaagaaggcacaatggga 489

                                                                       
Query: 420 aaatgtgattaaagacctgccctctcttccttatttttaaaatttattttaactaaagta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaatgtgattaaagacctgccctctcttccttatttttaaaatttattttaactaaagta 429

                                          
Query: 480 gaattataccacttcttctgtttccttccag 510
           |||||||||| |||||||||||| |||||||
Sbjct: 428 gaattatacctcttcttctgttttcttccag 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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