BAC Information

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BAC

Clone NameMSMg01-367I10
Chromosome8 (Build37)
Map Location 35,399,623 - 35,400,154
singlet/doubletsinglet
Overlap genenone
Upstream geneWrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I10.T7 (MSMg01no367_i10.b1)MSMg01-367I10.TJ (MSMg01no367_i10.g1)
ACCAG474973AG474974
length774772
length of high quality
(start - end)
546 (47 - 592)532 (77 - 608)
definitionCHROMAT_FILE: MSMg01no367_i10.b1 PHD_FILE: MSMg01no367_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:43 2005CHROMAT_FILE: MSMg01no367_i10.g1 PHD_FILE: MSMg01no367_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGATATGACAAGAATGGCTATCATGAGAAGAAAATTCTATAGA
GAATTCTATGGAGTCTTCTGTTAGAACTCTCTAAAGGAACAGAACTGATA
GAATAAATATACAATTTACCTTTCTTTCTCTGTATATATTAATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTACCTACCCATCCATCCATCAT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA
CCTTTCCATCTATCCATCCATCTTCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATTATCTATCTATTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CACAGGCTATAGTCTGGGTAGGGCAACAGTGACTGTTCCTCGACCAAGAA
TCTGGTCCAGAGATTGTGGCTCAGTCCACAAGGCTGGATGTCAATCAGGT
GACAAAGCCCTGGAGGAATTCCCAGGAATTGATGGGCTATGGTAAAATCC
CTGAAATTCTATAACTTGGCAAAGAAATGCTCCCTCCATCGGAAAAATAA
ACTTGCCTGTGTGGAGGGCGGCAC
CGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTATAAGAAGAAATAATGGAAAT
CAACTAAACAAAAACACACTAGACAAAGAGGTAGTTGGAAAAGGGAAGCT
GGCCCTGCCTTTGGGAACCTAAGAGAATTAAATGTGATGCAGAATTCTGG
ATGGGATTCTGGCACAGAAAGCAGAGAGGTTGGAGAAAAGCTACAGAAAT
ATGAAGACGGTGTTGGTGTTCATGCATATAATAATAATGTAAATTGTCAA
TAACAGGAGAGCTGGGCACAGGGTATTGAGAATTCTGTGAGATATTTGCA
GTGTTTGTCTAAATCAAAGCTGTTTTCCTTTTCATTTGATGGGGCTGGGA
TAAGCCTTATCCCAAAGCGTGAAAAGGAAATTAATAGCTAAAGCAATAAT
GCGTGGTTGAGTTCTTGCTCTGCCAGCGTGAGGACCAGAGATTGAATCCC
AGGATTCCTGGGCGTGGCTGTCCATGCTTGTGGCTCCACCATTGCAGGGC
AGAAGCAGCCAGATGAGGGGAGCTGGAGGGTCAGCCAGGCTATCCATAAC
AGTGAGCTTCAATTCACTGAGAGAGGCTGCCTTGAGGGAATAAGGAAGAG
AGTGACAGGGAAATGACTGCCGAATTCTTGCTCTGGCCTCCCATGTGCAT
ATGTGCACAATGGTGTTCCCCGGCTTGATTCCTTGCAGTGTGCACCTCCC
ATTCTCCAGTTGGTCCTATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i10.g1 MSMg01no367_i10.g1 CHROMAT_FILE:
MSMg01no367_i10.g1 PHD_FILE: MSMg01no367_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:43 2005
         (532 letters)



>mm_chr8_35399351_35400282
          Length = 932

 Score = 1029 bits (532), Expect = 0.0
 Identities = 532/532 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtataagaagaaataatggaaatcaactaaacaaaaacacactagacaaagaggtagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agtataagaagaaataatggaaatcaactaaacaaaaacacactagacaaagaggtagtt 745

                                                                       
Query: 61  ggaaaagggaagctggccctgcctttgggaacctaagagaattaaatgtgatgcagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggaaaagggaagctggccctgcctttgggaacctaagagaattaaatgtgatgcagaatt 685

                                                                       
Query: 121 ctggatgggattctggcacagaaagcagagaggttggagaaaagctacagaaatatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctggatgggattctggcacagaaagcagagaggttggagaaaagctacagaaatatgaag 625

                                                                       
Query: 181 acggtgttggtgttcatgcatataataataatgtaaattgtcaataacaggagagctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acggtgttggtgttcatgcatataataataatgtaaattgtcaataacaggagagctggg 565

                                                                       
Query: 241 cacagggtattgagaattctgtgagatatttgcagtgtttgtctaaatcaaagctgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacagggtattgagaattctgtgagatatttgcagtgtttgtctaaatcaaagctgtttt 505

                                                                       
Query: 301 ccttttcatttgatggggctgggataagccttatcccaaagcgtgaaaaggaaattaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccttttcatttgatggggctgggataagccttatcccaaagcgtgaaaaggaaattaata 445

                                                                       
Query: 361 gctaaagcaataatgcgtggttgagttcttgctctgccagcgtgaggaccagagattgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctaaagcaataatgcgtggttgagttcttgctctgccagcgtgaggaccagagattgaa 385

                                                                       
Query: 421 tcccaggattcctgggcgtggctgtccatgcttgtggctccaccattgcagggcagaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcccaggattcctgggcgtggctgtccatgcttgtggctccaccattgcagggcagaagc 325

                                                               
Query: 481 agccagatgaggggagctggagggtcagccaggctatccataacagtgagct 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agccagatgaggggagctggagggtcagccaggctatccataacagtgagct 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)