BAC Information

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BAC

Clone NameMSMg01-367P02
Chromosome8 (Build37)
Map Location 120,402,841 - 120,447,418
singlet/doubletdoublet
Overlap genenone
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P02.T7 (MSMg01no367_p02.b1)MSMg01-367P02.TJ (MSMg01no367_p02.g1)
ACCAG475289AG475290
length783746
length of high quality
(start - end)		300 (51 - 350)592 (77 - 668)
definitionCHROMAT_FILE: MSMg01no367_p02.b1 PHD_FILE: MSMg01no367_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:14 2005CHROMAT_FILE: MSMg01no367_p02.g1 PHD_FILE: MSMg01no367_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,402,841 - 120,403,132)(120,446,827 - 120,447,418)
sequence
GGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCCCTTGGCTTCGTTTGTTAGGGGTAAACATTACTTCTAC
CCCAGGGGAAGGATTAATGCTAAAACGTGTTGACATTTTGACATTTTTGA
CAGCGGTTCCATATGTCAGCTAGGAGAAATCTGGCAATATGTTGTTAGAT
TAAAAAAAAAATAAAGTTACTTGGGTCATCATCTGATGACCCTGATCAAT
GGAAATGGTAATTTGGAGCGTGAGGACCCATCCAGATCTTCTAATTTGAG
AGAACCTTTGGTAGGAAAATGCTATGTGTGGGTGGTGGTGGTGGTGNAAT
TCTGTATCTCCGTTTTTGTTTCTGATTTTATTGTTNNCCTCTTTATCGCC
CCTTCCCTTTTCATCTCCTCCACCCATGTTTTCCCACCCACCCCCCTCTT
ACACGTCCTTTGCTCTATATCTCGTTTCGTTCTCTCCCCCTCCCGTTACT
CTTTTCTCCATCGTTTCCCCTCTCCATTACTTTTCTTCTTCCCCTCCCTT
TTCCCCTTCTTCTTCTTCCTCTTCCCCATTTCTCTTTTCCTCCTCCCCTT
TTTTCCTTCTTCTTCTGCTTTTTTCTCCCTCCCTCTCTCCCCTTTTCCTA
CCTTTTCCCTCCTTCCCTTCCTTCTTTCTTTTCACTCTTCCCCTTTTTCC
TTCTTCCCCCCTTCCTCTCCTTCCCTTTATTTTCTTCTCCCCTCCTCCCC
TCCCCTTTTCCCTTCTTCTTCCCCCATTTTTCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGCGCTCAGCTGTGCCCCATG
ACGAAGTGAATGAAGAATTTAAAGGCACCCAAACCCCATCTCTCCCTCCC
CTCTGATCTCTGTTAGTGTTTCCCATTGGCCAGAAACAGTGAGGAACCAA
GGCAAGAGATCCAGCAGACGGATCCAAAGCGGTATGTGTGAGCCTGCCAG
CTTAATGCGGAGTGCAAATCGGAGACATCCAAAGGGGAAAGGAAACCAAG
GGACGTCCCAGGAGCTTTTATGCCTGAGACCGCGTCTAGCAGAGGAATTA
AAAAACTTCTTTTGATTGATGTGCTCTATTTCATTGCAAAGGCTACCATA
CTCTGATACTAGCATACTCAGATGTCGGAGTAGCCTCCCCCCTGGAAAAC
AGAAGCCACTTTGGAGTGATCAGAGCGTCAGAGTTGAGCAAGTCTTTTCA
GAGCCTCTCTGGGGCAACACATAAACATCGGTGCTGGCACTTCCAGACAC
CATAGTCATAAGACAATGTCACTTTCCACATTGCCAGGTCTCTGCCGTCG
TGAGCCCCACAGACACCTCGCTCCCCACTCCTCAGCCACCTGGGGGTTCT
CTGTGATCAGTTCTCCATTCCCCTATTCGGTGTGTATCAATCCTAATGAA
CCCCATCCATAAAGGGTCCTCTTCCTGACAAGGGGCATGAAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p02.b1 MSMg01no367_p02.b1 CHROMAT_FILE:
MSMg01no367_p02.b1 PHD_FILE: MSMg01no367_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:14 2005
         (300 letters)



>mm_chr8_120402637_120403336
          Length = 700

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccccttggcttcgtttgttaggggtaaacattacttctaccccaggggaaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccccttggcttcgtttgttaggggtaaacattacttctaccccaggggaaggat 264

                                                                       
Query: 65  taatgctaaaacgtgttgacattttgacatttttgacagcggttccatatgtcagctagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatgctaaaacgtgttgacattttgacatttttgacagcggttccatatgtcagctagg 324

                                                                       
Query: 125 agaaatctggcaatatgttgttagattaaaaaaaaaataaagttacttgggtcatcatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaatctggcaatatgttgttagattaaaaaaaaaataaagttacttgggtcatcatct 384

                                                                       
Query: 185 gatgaccctgatcaatggaaatggtaatttggagcgtgaggacccatccagatcttctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatgaccctgatcaatggaaatggtaatttggagcgtgaggacccatccagatcttctaa 444

                                                               
Query: 245 tttgagagaacctttggtaggaaaatgctatgtgtgggtggtggtggtggtg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgagagaacctttggtaggaaaatgctatgtgtgggtggtggtggtggtg 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_p02.g1 MSMg01no367_p02.g1 CHROMAT_FILE:
MSMg01no367_p02.g1 PHD_FILE: MSMg01no367_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:15 2005
         (592 letters)



>mm_chr8_120446470_120447461
          Length = 992

 Score = 1145 bits (592), Expect = 0.0
 Identities = 592/592 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagcgctcagctgtgccccatgacgaagtgaatgaagaatttaaaggcacccaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 agcagcgctcagctgtgccccatgacgaagtgaatgaagaatttaaaggcacccaaaccc 890

                                                                       
Query: 61  catctctccctcccctctgatctctgttagtgtttcccattggccagaaacagtgaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 catctctccctcccctctgatctctgttagtgtttcccattggccagaaacagtgaggaa 830

                                                                       
Query: 121 ccaaggcaagagatccagcagacggatccaaagcggtatgtgtgagcctgccagcttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ccaaggcaagagatccagcagacggatccaaagcggtatgtgtgagcctgccagcttaat 770

                                                                       
Query: 181 gcggagtgcaaatcggagacatccaaaggggaaaggaaaccaagggacgtcccaggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gcggagtgcaaatcggagacatccaaaggggaaaggaaaccaagggacgtcccaggagct 710

                                                                       
Query: 241 tttatgcctgagaccgcgtctagcagaggaattaaaaaacttcttttgattgatgtgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttatgcctgagaccgcgtctagcagaggaattaaaaaacttcttttgattgatgtgctc 650

                                                                       
Query: 301 tatttcattgcaaaggctaccatactctgatactagcatactcagatgtcggagtagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tatttcattgcaaaggctaccatactctgatactagcatactcagatgtcggagtagcct 590

                                                                       
Query: 361 cccccctggaaaacagaagccactttggagtgatcagagcgtcagagttgagcaagtctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cccccctggaaaacagaagccactttggagtgatcagagcgtcagagttgagcaagtctt 530

                                                                       
Query: 421 ttcagagcctctctggggcaacacataaacatcggtgctggcacttccagacaccatagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttcagagcctctctggggcaacacataaacatcggtgctggcacttccagacaccatagt 470

                                                                       
Query: 481 cataagacaatgtcactttccacattgccaggtctctgccgtcgtgagccccacagacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cataagacaatgtcactttccacattgccaggtctctgccgtcgtgagccccacagacac 410

                                                               
Query: 541 ctcgctccccactcctcagccacctgggggttctctgtgatcagttctccat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctcgctccccactcctcagccacctgggggttctctgtgatcagttctccat 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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