BAC Information

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BAC

Clone NameMSMg01-367P08
Chromosome8 (Build37)
Map Location 39,596,789 - 39,775,201
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P08.T7 (MSMg01no367_p08.b1)MSMg01-367P08.TJ (MSMg01no367_p08.g1)
ACCAG475301AG475302
length758754
length of high quality
(start - end)		371 (47 - 417)632 (77 - 708)
definitionCHROMAT_FILE: MSMg01no367_p08.b1 PHD_FILE: MSMg01no367_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:16 2005CHROMAT_FILE: MSMg01no367_p08.g1 PHD_FILE: MSMg01no367_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,774,862 - 39,775,201)(39,596,789 - 39,597,420)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATAAATTACCCAACTAGAATCCAAATAACTCAAATAAATGGGG
TACAGCACTAATTTTTTATATTTCAAAGTTTTTTGTTTATAACAAAATTT
ACTTTTATTTACTTTTGAGAATTTCAAGATAATCAAGCTACCCAACTGCA
GAAGTCCTAGGTCTGTCCCATGCAGGCGATTCTGTTGACAGTTCAGGTTT
TGAGACCCTCTATTGGCTCAACTTGGCAGATTCTGTGGGTTTTCTTGTGT
GAACACACTCATTTTGGGTTGTATTTAATTTTTTTTTTGTTTTTTGTTTT
TAGGAGAAAACTCACGCTTGGTACAGTGAACATGATAAAGAACCCACTAC
TATGATTACAGATATGCCAAATGGGCATAGTGTCAAACTGGCCTGTTTCA
TATCTCTGCTCTCAGGCCTCTTCAGAGTTTTTGTATAGTGGCCAGTGTTT
AACATAGAAAGTCAAAGCTGAACAAATTGCATACAATAAGTTTTAGTAGA
TAGTTCAGCACTAACTGAAACATCTTTACCACTCCTTTTTTCCTGCCAAT
GCTTATAGACTATTTAAGAAAGATAATACCTACCTGAGATTGCGAGAATC
AGACATTGTTAGAAACCACTTATAATATCACCTTTTTGTACTAATGATTC
ACTCCTCCCTGTGTTTCTGTCGCCTACCATCTCGTTTTGGAACTCTTCCA
CTTTGACN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCACTTATTCACATTCTAAGCCA
AAGACTATGAGACATGCAGGACATACAGACGTTAGTCAAATCATATTGCC
TAGTCTAAAATGGACACCCTTGAATGGAGTGACCAAGACTACTTATTATC
TATGGATTTCTTCATATTTGGTCACTATGTCAGTATTTGGCAATATATCT
GAATATTAAAAGTGAGGAGGGGAAGACCTTTAAGCCCCAATAAGGGAATC
TTCCGTAATGCAGTACAGAGAAAGTTAAAACATCCACACCCAAGTCTATA
CCTTTGAAGCGCATTTCAAACATGAACACATCTGAAAGGAAGATATGTGC
TCTCATCTTAGTAATTAAGTGGAAGATTAAGAGCCAGAAAAGCTGATTAA
TCAGGATTTTAGTTTGGAAGGCCTCCAACAGGGGCAAAGTAGGAGAGAAA
ACCCAAGGGTTGCCATAAACCAAACAGATGGTTAATGATGTATAGGTCAG
TATCAGACCTGGCCCGGGACTAATCTCACAAACACTGATTTCTTTCCCTT
TGCATCTTCATGCCAAACAGGTGCAAAAGATCCTGACTAGGGAAGGTGGC
ATAGTGAATTTAAGAGGCTAGAAAATTAAAATAGTAAATTTCCAGGGGGA
AAAGATAAATGGCCCGATTAAATCTGGACTTCTTTCCTCATTGAGGATGA
TAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p08.b1 MSMg01no367_p08.b1 CHROMAT_FILE:
MSMg01no367_p08.b1 PHD_FILE: MSMg01no367_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:16 2005
         (371 letters)



>mm_chr8_39774862_39775632
          Length = 771

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaataaattacccaactagaatccaaataactcaaataaatggggtacagcacta 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaattcaataaattagtcaactagaatccaaataactcaaataaatggggtacagcacta 281

                                                                       
Query: 65  attttttatatttcaaagttttttgtttataacaaaatttacttttatttacttttgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attttttatatttcaaagttttttgtttataacaaaatttacttttatttacttttgaga 221

                                                                       
Query: 125 atttcaagataatcaagctacccaactgcagaagtcctaggtctgtcccatgcaggcgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atttcaagataatcaagctacccaactgcagaagtcctaggtctgtcccatgcaggcgat 161

                                                                       
Query: 185 tctgttgacagttcaggttttgagaccctctattggctcaacttggcagattctgtgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tctgttgacagttcaggttttgagaccctctattggctcaacttggcagattctgtgggt 101

                                                                       
Query: 245 tttcttgtgtgaacacactcattttgggttgtatttaattttttttttgttttttgtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tttcttgtgtgaacacactcattttgggttgtatttaattttttttttgttttttgtttt 41

                                                   
Query: 305 taggagaaaactcacgcttggtacagtgaacatgataaag 344
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  taggagaaaactcacgcttggtacagtgaacatgataaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_p08.g1 MSMg01no367_p08.g1 CHROMAT_FILE:
MSMg01no367_p08.g1 PHD_FILE: MSMg01no367_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:16 2005
         (632 letters)



>mm_chr8_39596589_39597620
          Length = 1032

 Score = 1222 bits (632), Expect = 0.0
 Identities = 632/632 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacttattcacattctaagccaaagactatgagacatgcaggacatacagacgttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacttattcacattctaagccaaagactatgagacatgcaggacatacagacgttagt 260

                                                                       
Query: 61  caaatcatattgcctagtctaaaatggacacccttgaatggagtgaccaagactacttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatcatattgcctagtctaaaatggacacccttgaatggagtgaccaagactacttat 320

                                                                       
Query: 121 tatctatggatttcttcatatttggtcactatgtcagtatttggcaatatatctgaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctatggatttcttcatatttggtcactatgtcagtatttggcaatatatctgaatat 380

                                                                       
Query: 181 taaaagtgaggaggggaagacctttaagccccaataagggaatcttccgtaatgcagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaagtgaggaggggaagacctttaagccccaataagggaatcttccgtaatgcagtac 440

                                                                       
Query: 241 agagaaagttaaaacatccacacccaagtctatacctttgaagcgcatttcaaacatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaaagttaaaacatccacacccaagtctatacctttgaagcgcatttcaaacatgaa 500

                                                                       
Query: 301 cacatctgaaaggaagatatgtgctctcatcttagtaattaagtggaagattaagagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatctgaaaggaagatatgtgctctcatcttagtaattaagtggaagattaagagcca 560

                                                                       
Query: 361 gaaaagctgattaatcaggattttagtttggaaggcctccaacaggggcaaagtaggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaagctgattaatcaggattttagtttggaaggcctccaacaggggcaaagtaggaga 620

                                                                       
Query: 421 gaaaacccaagggttgccataaaccaaacagatggttaatgatgtataggtcagtatcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaacccaagggttgccataaaccaaacagatggttaatgatgtataggtcagtatcag 680

                                                                       
Query: 481 acctggcccgggactaatctcacaaacactgatttctttccctttgcatcttcatgccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctggcccgggactaatctcacaaacactgatttctttccctttgcatcttcatgccaa 740

                                                                       
Query: 541 acaggtgcaaaagatcctgactagggaaggtggcatagtgaatttaagaggctagaaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggtgcaaaagatcctgactagggaaggtggcatagtgaatttaagaggctagaaaat 800

                                           
Query: 601 taaaatagtaaatttccagggggaaaagataa 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 taaaatagtaaatttccagggggaaaagataa 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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