BAC Information

Click to search

BAC

Clone NameMSMg01-367P24
Chromosome8 (Build37)
Map Location 32,686,841 - 32,806,041
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
Downstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P24.T7 (MSMg01no367_p24.b1)MSMg01-367P24.TJ (MSMg01no367_p24.g1)
ACCAG475333AG475334
length762759
length of high quality
(start - end)		544 (47 - 590)560 (76 - 635)
definitionCHROMAT_FILE: MSMg01no367_p24.b1 PHD_FILE: MSMg01no367_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:19 2005CHROMAT_FILE: MSMg01no367_p24.g1 PHD_FILE: MSMg01no367_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,805,502 - 32,806,041)(32,686,841 - 32,687,400)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATGGTCATTGTCTGCTAATAACAGTGCAACCTTTATGTAGTC
CAGTCTGTGTGTGGCAATTTGGTGTGCGTATGTTAACTTCTTGAAATCTC
TCAACCACATATTAAGTAAGTTTTCCAAAATCACACAGCCAGAAATCTCC
ATATCTCATATGGAAAATACCATAAGAACAAGGAATGCTTCAGAGGCTTC
TTAAGGAAGGTGCCAAGACCCCTCCCCCCACCAACCCCACCAACCCCACC
ATGCTTGAGACAAATAAGATGCCCATTTAGCTCTTTCCTTAGGAAGTTAA
GGGCAAAACACAGTGGGAATTTCTGTTTGGCTGAGAGTATGTACATTCTG
TGTATGTAACTGATTGTGAAGGACAAGAAACAGACTTCATGTCAGCTGCC
AGAGTCTTACTATGCCCTTCCCTGAGGCAGCTCTCAATCTCCACTCCAAA
TCAGTGTGAACAAATGATCTGACGATCCAAGTGTGAAAGGGGCAGCAGGG
TCTTGGTCTGTCAGTGTGCTGCGTTATTAGCTCACATGAAGAGCCCATAC
ATCTCTGTCAGATACTGTGCAAGCTGAGTGTATTTTAATGGAGCTGGGCC
CCCAAGTAATTTAAAATGCGAGAGGGAATGGTAGTTAGGACAGAATCCCT
CAGGCCCTGCATGGCTTTAGTAAGTTGGGATGGAACTCTCTTCTTAATTC
TTAAAATTTTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTATAGCAAAGACTCAACAATG
CCTTGTTGCACAAGAGCCAGGCTGGTTATGGGGATTTGTTTACAAGAAAG
CATATAAAAGCTGCCCTGTGACTCAAACAGTGGGTGGTCTAAGTCCATGT
ACACAGTGGCCTTTTCATGACTATAAAGGCCACTGTTAGTTGATGATTAG
TGCAGTTATATGGAAATGTCCTTAAAAGATAACCAACATAATTTATAAGG
GACCACTGACACCAGTGTGTTCATCTTTGCTGGGATTTGGATTGCATTAT
AATGTGAAGCCATTTAATTGAAAAAGGTGTCTACGTTTCATATCACAGGG
TACTGAAGGGAGTTAGCTGTGGTGATCAGCTTATTTTGAGAATGGGTAAG
ACAGGGTGCCTTCAATGCATGATACACAAAAGGTACAAAGACCAGAAAAG
CTTTGAACAGATTGTCTCTTGATCTCCTATAGCCTTAATGACTTTGACTA
GGCAGGGGTGCATGTGAAAGGAGAGCCCAGAACATTCCATGTACATTACC
CCCATCCCAGCAGCTACACTGTAAGCAGCCCCATTAGAAGATCCTTCACT
GACATTACACAAGTCCTTCCTCGGGTTTTTCTGACTTATATTTTTATTTT
TGTTATAAGTATATATATAAATTTGAGATTTCAACATTTTATATTTCTAG
AAAAATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p24.b1 MSMg01no367_p24.b1 CHROMAT_FILE:
MSMg01no367_p24.b1 PHD_FILE: MSMg01no367_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:19 2005
         (544 letters)



>mm_chr8_32805298_32806241
          Length = 944

 Score = 1036 bits (536), Expect = 0.0
 Identities = 539/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatggtcattgtctgctaataacagtgcaacctttatgtagtccagtctgtgt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattcttatggccattgtctgctaataacagtgcaacctttatgtagtccagtctgtgt 685

                                                                       
Query: 65  gtggcaatttggtgtgcgtatgttaacttcttgaaatctctcaaccacatattaagtaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtggcaatttggtgtgcgtatgttaacttcttgaaatctctcaaccacatattaagtaag 625

                                                                       
Query: 125 ttttccaaaatcacacagccagaaatctccatatctcatatggaaaataccataagaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttccaaaatcacacagccagaaatctccatatctcatatggaaaataccataagaaca 565

                                                                       
Query: 185 aggaatgcttcagaggcttcttaaggaaggtgccaagacccctccccccaccaaccccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggaatgcttcagaggcttcttaaggaaggtgccaagacccctccccccaccaaccccac 505

                                                                       
Query: 245 caaccccaccatgcttgagacaaataagatgcccatttagctctttccttaggaagttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaccccaccatgcttgagacaaataagatgcccatttagctctttccttaggaagttaa 445

                                                                       
Query: 305 gggcaaaacacagtgggaatttctgtttggctgagagtatgtacattctgtgtatgtaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggcaaaacacagtgggaatttctgtttggctgagagtatgtacattctgtgtatgtaac 385

                                                                       
Query: 365 tgattgtgaaggacaagaaacagacttcatgtcagctgccagagtcttactatgcccttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgattgtgaaggacaagaaacagacttcatgtcagctgccagagtcttactatgcccttc 325

                                                                       
Query: 425 cctgaggcagctctcaatctccactccaaatcagtgtgaacaaatgatctgacgatccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgaggcagctctcaatctccactccaaatcagtgtgaacaaatgatctgacgatccaa 265

                                                                       
Query: 485 gtgtgaaaggggcagcagggtcttggtctgtcagtgtgctgcgttattagctcacatgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtgaaaggggcagcagggtcttggtctgtcagtgtgctgcgttattagctcacatgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_p24.g1 MSMg01no367_p24.g1 CHROMAT_FILE:
MSMg01no367_p24.g1 PHD_FILE: MSMg01no367_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:19 2005
         (560 letters)



>mm_chr8_32686641_32687600
          Length = 960

 Score = 1083 bits (560), Expect = 0.0
 Identities = 560/560 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctatagcaaagactcaacaatgccttgttgcacaagagccaggctggttatggggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctatagcaaagactcaacaatgccttgttgcacaagagccaggctggttatggggat 260

                                                                       
Query: 61  ttgtttacaagaaagcatataaaagctgccctgtgactcaaacagtgggtggtctaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttacaagaaagcatataaaagctgccctgtgactcaaacagtgggtggtctaagtc 320

                                                                       
Query: 121 catgtacacagtggccttttcatgactataaaggccactgttagttgatgattagtgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtacacagtggccttttcatgactataaaggccactgttagttgatgattagtgcag 380

                                                                       
Query: 181 ttatatggaaatgtccttaaaagataaccaacataatttataagggaccactgacaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatatggaaatgtccttaaaagataaccaacataatttataagggaccactgacaccag 440

                                                                       
Query: 241 tgtgttcatctttgctgggatttggattgcattataatgtgaagccatttaattgaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgttcatctttgctgggatttggattgcattataatgtgaagccatttaattgaaaaa 500

                                                                       
Query: 301 ggtgtctacgtttcatatcacagggtactgaagggagttagctgtggtgatcagcttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgtctacgtttcatatcacagggtactgaagggagttagctgtggtgatcagcttatt 560

                                                                       
Query: 361 ttgagaatgggtaagacagggtgccttcaatgcatgatacacaaaaggtacaaagaccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgagaatgggtaagacagggtgccttcaatgcatgatacacaaaaggtacaaagaccag 620

                                                                       
Query: 421 aaaagctttgaacagattgtctcttgatctcctatagccttaatgactttgactaggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagctttgaacagattgtctcttgatctcctatagccttaatgactttgactaggcag 680

                                                                       
Query: 481 gggtgcatgtgaaaggagagcccagaacattccatgtacattacccccatcccagcagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggtgcatgtgaaaggagagcccagaacattccatgtacattacccccatcccagcagct 740

                               
Query: 541 acactgtaagcagccccatt 560
           ||||||||||||||||||||
Sbjct: 741 acactgtaagcagccccatt 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |