Query= MSMg01no368_b11.b1 MSMg01no368_b11.b1 CHROMAT_FILE:
MSMg01no368_b11.b1 PHD_FILE: MSMg01no368_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:26 2005
(553 letters)
>mm_chr8_93973430_93974382
Length = 953
Score = 926 bits (479), Expect = 0.0
Identities = 515/527 (97%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 28 gaaagacagtcttatcatgtatagtactatttattgccagattttctctgcaaaacttta 87
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gaaagacagtcttatcatgtgtagtactatttattgccagattttctctgcaaaacttta 894
Query: 88 aatatatcattcttcaagg-ttttttttttcttttcttttctaagacaccactaatttct 146
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aatatatcattcttcaaggtttttttttttcttttcttttctaagacaccactaatttct 834
Query: 147 aagtgggctggcctgcagcttgggtcaatagacagttcagccagtccctggctcctcaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aagtgggctggcctgcagcttgggtcaatagacagttcagccagtccctggctcctcaga 774
Query: 207 ggcaagcctagaccatggatggatccataaatgggtgtctgacttcagtttaagggaatt 266
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 773 ggcaagcctagaccatggatggatccataaatgggtgtctgacttcagtataagggaact 714
Query: 267 agccataatctgacgcagtaggagtaggccagaaggcctggctcacacgcaccacactag 326
|||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 713 agccggaagctgacacagtaggagtaggccagaaggcctggctcacacacaccacactag 654
Query: 327 ctctaagagagtctgtggaagtcgtcttaggccgtgagtccacctgcctagatatggcac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctctaagagagtctgtggaagtcgtcttaggccgtgagtccacctgcctagatatggcac 594
Query: 387 catttttatggaatccaaatggtgcaaagaagccaacactggatctgacccagagtctaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 catttttatggaatccaaatggtgcaaagaagccaacactggatctgacccagagtctaa 534
Query: 447 gttcaccgagacaaaccaagatcctgggtctctgcaggccacacagaagcctgggccaat 506
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 533 gttcaccgagacaaaccaaaatcctgggtctctgcaggtcacacagaagcctgggccaat 474
Query: 507 ctaccatgggcctgacactgggcagacttggcacttcaggtcagagt 553
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctaccgtgggcctgacactgggcagacttggcacttcaggtcagagt 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_b11.g1 MSMg01no368_b11.g1 CHROMAT_FILE:
MSMg01no368_b11.g1 PHD_FILE: MSMg01no368_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:26 2005
(534 letters)
>mm_chr8_93803003_93803936
Length = 934
Score = 1033 bits (534), Expect = 0.0
Identities = 534/534 (100%)
Strand = Plus / Plus
Query: 1 tccaaatcaactgaaaacaatagtttaaaaagaaattaagattctatccctcttaagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaaatcaactgaaaacaatagtttaaaaagaaattaagattctatccctcttaagagt 260
Query: 61 tttgtttgagatgtcaattcagatgtctgaaagacacaagttttggtattctttatatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtttgagatgtcaattcagatgtctgaaagacacaagttttggtattctttatatct 320
Query: 121 aagaaaatacagaaagagcaccaccatttaactccatgcacactcctccagagaaactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaaatacagaaagagcaccaccatttaactccatgcacactcctccagagaaactca 380
Query: 181 tgcaacctgtcagtcaacttaatcatcgggtggataaatcccgaccactgtgctattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaacctgtcagtcaacttaatcatcgggtggataaatcccgaccactgtgctattgga 440
Query: 241 ataaagactccattgactctgtgtgcctactgtaggcttgtgaaatgtaagaaacatgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagactccattgactctgtgtgcctactgtaggcttgtgaaatgtaagaaacatgta 500
Query: 301 taagtagttttaaagtgttattgcttatggatgcactctggttctaggaatattaaaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagtagttttaaagtgttattgcttatggatgcactctggttctaggaatattaaaagt 560
Query: 361 gaaaaattatgttccatttattcaataaaatgtgaccctgtggtaagagtactaactaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaaattatgttccatttattcaataaaatgtgaccctgtggtaagagtactaactaaa 620
Query: 421 agtacattttttctcactaagtctgtattaaaccatttttttgttgttgttgttatggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtacattttttctcactaagtctgtattaaaccatttttttgttgttgttgttatggac 680
Query: 481 acagggttttactatgtagcccaaggcgggtctggaatttgcaattctcctgtc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagggttttactatgtagcccaaggcgggtctggaatttgcaattctcctgtc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
