Query= MSMg01no368_b12.b1 MSMg01no368_b12.b1 CHROMAT_FILE:
MSMg01no368_b12.b1 PHD_FILE: MSMg01no368_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:26 2005
(553 letters)
>mm_chr8_128993786_128994739
Length = 954
Score = 986 bits (510), Expect = 0.0
Identities = 541/552 (98%), Gaps = 3/552 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttct--attctcaatagacttctagggttgcttcagtaggttgacccataag 61
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 754 ggaattctttctaaattc-aaatagacttctagggttgcttcagtaggttgacccatgag 696
Query: 62 acttatttattttagaaacttagatttaaagttattttgaaatatgtgaagtcaaactct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 acttatttattttagaaacttagatttaaagttattttgaaatatgtgaagtcaaactct 636
Query: 122 agctgagttgtcatggcatggtctaagagacacaggagcaccgggctctgaatccaatct 181
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 635 agctgagttgtcatggcatggtctaagaggcacaggagcaccgagctctgaatccaatct 576
Query: 182 gctccccgtgtgtgaccctggacaacagcaggaactcggggcaagtttctgtgccttttc 241
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 575 gctccccgtgtgtgaccccggacaacagcaggagctcggggcaagtttctgtgccttttc 516
Query: 242 tggctttagcgttccagccttgcccgtctcctggttcagtcgaggatcacagggtctgag 301
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 tggctttagtgttccagccttgcccgtctcctgggtcagtcgaggatcacagggtctgag 456
Query: 302 ttaggatattccccgtggaaatcttcacggcaccgtaactgggggggctatactgtgttc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttaggatattccccgtggaaatcttcacggcaccgtaactgggggggctatactgtgttc 396
Query: 362 cccagctttgcccgctcagtctcacagacgtggatcctgctttaattcagacctgggaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cccagctttgcccgctcagtctcacagacgtggatcctgctttaattcagacctgggaga 336
Query: 422 agcaggctcctgacacctgtttttgacgtggttacaagaggaggactacagtgatgtgaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agcaggctcctgacacctgtttttgacgtggttacaagaggaggactacagtgatgtgaa 276
Query: 482 cgggaagcgttccctgaggttttaaaggcgtaatgtgtgatttttcacgagagtctttgc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cgggaagcgttccctgaggttttaaaggcgtaatgtgtgatttttcacgagagtctttgc 216
Query: 542 ttttgtttttag 553
||||||||||||
Sbjct: 215 ttttgtttttag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_b12.g1 MSMg01no368_b12.g1 CHROMAT_FILE:
MSMg01no368_b12.g1 PHD_FILE: MSMg01no368_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:26 2005
(491 letters)
>mm_chr8_128809912_128810808
Length = 897
Score = 911 bits (471), Expect = 0.0
Identities = 488/497 (98%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 1 ttaagaccaagtcattttatttttcctagagaggggatttccagttttgaaaatacatca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagaccaagtaattttatttttcctagagaggggatttccagttttgaaaatacatca 260
Query: 61 cttgaaagacatgaatgtcctggctggatcttgcccaaagtttaaactgaatgctaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaaagacatgaatgtcctggctggatcttgcccaaagtttaaactgaatgctaagga 320
Query: 121 gatgcctctttcattcacccccagaagatgcttaagatgcagcaggccctgactccatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgcctctttcattcacccccagaagatgcttaagatgcagcaggccctgactccatcg 380
Query: 181 atctgtgctgctctgggcctggggtggctgcagctgcgaagcggcccagccattcagg-- 238
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgtgctgctctgggtctggggtggctgcagctgcgaagcggcccagccattcaggct 440
Query: 239 ----ctgcgcttgcttttgggggtatatttaggctgttcctatttagcgctcccagaata 294
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcctgcgcttgcttctgggggtatatttaggctgttcctatttagcgctcccagaata 500
Query: 295 gccaccgttttttgtttctcaatcgtcctctaagtttttgctccttcctgcttcaaactg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaccgttttttgtttctcaatcgtcctctaagtttttgctccttcctgcttcaaactg 560
Query: 355 agagtgacatatgacataattgatgatttccaaaccctcccccattccaggagtctgccc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtgacatatgacataattgatgatttccaaaccctcccccattccaggagtctgccc 620
Query: 415 tttcaaatggcatctaagccctcggggatgtgattctcagtggtgtcccagacctcctct 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcaaatggcatctaagccctcggggatgtgattctcagtggtgtcccagacctcctct 680
Query: 475 gggtagagggtgccatg 491
|||||||||||||||||
Sbjct: 681 gggtagagggtgccatg 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 897
Length adjustment: 10
Effective length of query: 481
Effective length of database: 887
Effective search space: 426647
Effective search space used: 426647
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
