BAC Information

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BAC

Clone NameMSMg01-368F05
Chromosome8 (Build37)
Map Location 58,094,945 - 58,095,129
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368F05.T7 (MSMg01no368_f05.b1)MSMg01-368F05.TJ (MSMg01no368_f05.g1)
ACCAG475579AG475580
length758741
length of high quality
(start - end)		350 (44 - 393)516 (68 - 583)
definitionCHROMAT_FILE: MSMg01no368_f05.b1 PHD_FILE: MSMg01no368_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:44 2005CHROMAT_FILE: MSMg01no368_f05.g1 PHD_FILE: MSMg01no368_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCAATTCACAGATAACCCTAGACACAGAGACACAGAATCCCATC
TACAACCCTGAAATGCAAAGGTGTGGCTGTGCACCTGGTTCTATGCACCT
GTGTGGACTTCCATTGGCTACAAGGTTGTGGGAAGAAGCAGCAAGAGGCT
TTCAGCAAACAGGTGCCTCCAATAAGTTTTCCTACAAAGGAAAGGACCTT
GCCCTAAGGAGGTTCAGTGGGTGGAGGTCACATGGCTGGGTGGCCATTTT
GCAGTATGAGGAAATGTATGAGGAGAACAGATTCCATCCTGTTTTGTTTG
TTGGTTTACTTAGTTGGTTTTGGTGTTGGTGTTGGTGTTGGTTGNGNNTT
TNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTTT
NNNTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
NTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTNNTTTTTTTTTTTTTTTTT
TTTNTTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTTGCTTATTCAACAT
CAGCAGAAAAATTACATATATGTGCAGGGTGTCAGAGTTCTGTGAGTAGT
TGACTCAGTTCAGATAACCCTGTTATGTCTTCACATTCCTCTTTTATCTT
TCTGGTCAATATGTTCCCAGGAATGTTTTAACTACAGGGCATACCCGGGT
TTGTTTTTCTTTTTTCTCAACCTCAGGCAGCCTCTAGGCTCACAAACAAC
CAGCAATTTCTGAGTACTTCATATGACTTACAGGTCTTGAAATGTCATCT
TTCTTTCAATACCAATTAATTCCTTGGGCCCTTTAGATTATTTTTAATAG
TTGGAACATCAGAGTCAATTGTCCCAAGATAATGAAGTGATAGGCAAGTA
GGGAAGGATCCATGTTAAATTACCTTAAAAGATCGGTATAGAGGCTAACA
TAAGAAGTATTGGAAAGGTGAATTGCAGATTTAGGGGCCAAATAGTATCA
GATATTGTGGTGTGACCCATGAACAAGTATGGTTTCTGGCACTGTCCCTT
TTCAACGCCCACATAGAGGCCAATATTTTTGAGCACCTAAGGTATTTTTT
ATAACTTCACCCCAAATCCCTACTTTGTGGGATGACCAGGGAGAATGGCC
CTTTGGTCTTATTCCTCCACGAGTTCCCTGGTTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_f05.g1 MSMg01no368_f05.g1 CHROMAT_FILE:
MSMg01no368_f05.g1 PHD_FILE: MSMg01no368_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:44 2005
         (516 letters)



>mm_chr8_58094528_58095443
          Length = 916

 Score =  265 bits (137), Expect = 5e-75
 Identities = 176/195 (90%), Gaps = 10/195 (5%)
 Strand = Plus / Minus

                                                                       
Query: 292 ataccaattaattccttgggccctttagattatttttaatagttggaacatcagagtcaa 351
           |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 602 ataccaattaattctttgggccctctagattatttttaatagttggaatatcagagtcaa 543

                                                                       
Query: 352 ttgtcccaagataatgaagtgataggcaagtagggaaggatccatgttaaattaccttaa 411
           ||||||||| ||||||| ||||||||||||||||||||||||||||          ||||
Sbjct: 542 ttgtcccaaaataatgaggtgataggcaagtagggaaggatccatg----------ttaa 493

                                                                       
Query: 412 aagatcggtatagaggctaacataagaagtattggaaaggtgaattgcagatttaggggc 471
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct: 492 aagatcggtatagaggctaacataagaaatattggaaaggtgaattgcagttttaggagc 433

                          
Query: 472 caaatagtatcagat 486
            ||||||||||||||
Sbjct: 432 taaatagtatcagat 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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