Query= MSMg01no368_f16.b1 MSMg01no368_f16.b1 CHROMAT_FILE:
MSMg01no368_f16.b1 PHD_FILE: MSMg01no368_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:46 2005
(569 letters)
>mm_chr8_109766727_109767695
Length = 969
Score = 1000 bits (517), Expect = 0.0
Identities = 556/573 (97%), Gaps = 7/573 (1%)
Strand = Plus / Minus
Query: 4 ggaattccaggcatgtgccaccatgtagcttttacttggcactgagatgtgaatccaggg 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 629 ggaattccaggcaagtgccaccatgtagcttttacttggcactgagatgtgaacccaggg 570
Query: 64 cttcaagcatgctctaccttcaagcagagctatactaccctcccccgagccgtgtggttt 123
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 569 cttctagcatgctctaccttccagcagagctatactaccctcccccgagccctgtggttt 510
Query: 124 ttcactagctcctaagtgaagaaaccttggaggtgggtgtcttgatcgtctctatttttc 183
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 509 ttcactagctcctaagtggagaaacctcagaggtgggtgtcttgatcgtctctatttttc 450
Query: 184 aggtacagaaacggaggactagaatagagctggtatctccatagctggaaagcaggaggc 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 449 aggtacagaaacggaggactagaatagagctggcatctccatagctggaaagcaggaggc 390
Query: 244 gccgactcccattctcatgttctcagtcaccgtttaaatagttctctctgctccactctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gccgactcccattctcatgttctcagtcaccgtttaaatagttctctctgctccactctc 330
Query: 304 caaggattcctcatgctctcaagactgaaaaacagttcttcttcctcccagcggaccaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaggattcctcatgctctcaagactgaaaaacagttcttcttcctcccagcggaccaag 270
Query: 364 ccaaactcactcggtcaacagggtctcaagcaagggagtgaatggggagggaaaaagaga 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 269 ccaaactcactcggtcaacagggtctcaagcaagggagtgagtggggagggaaaaagaga 210
Query: 424 aagttagacaaaattataacactactccagcccgtactgaggctgacacagctctatgt- 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aagttagacaaaattataacactactccagcccgtactgaggctgacacagctctatgtc 150
Query: 483 ------cccccccagcctgcttttatatcattctaggtgcatccaaaacacatggtcagt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cccccccccccccagcctgcttttatatcattctaggtgcatccaaaacacatggtcagt 90
Query: 537 tcttagatcaaagacaaagtgatcaagcaaagt 569
|||||||||||||||||||||||||||||||||
Sbjct: 89 tcttagatcaaagacaaagtgatcaagcaaagt 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_f16.g1 MSMg01no368_f16.g1 CHROMAT_FILE:
MSMg01no368_f16.g1 PHD_FILE: MSMg01no368_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:46 2005
(572 letters)
>mm_chr8_109579621_109580592
Length = 972
Score = 1067 bits (552), Expect = 0.0
Identities = 567/572 (99%)
Strand = Plus / Plus
Query: 1 aatactcagactaggatgatgactttgtgactcgaatactgggatcacaagtgtcaataa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactcagactaggatgatgactctgtgactcgaatactgggatcacaagtgtcaataa 260
Query: 61 gactggctgaatgtttattatttaaacaacagcctatgagggagtagtggactcctagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactggctgaatgtttattatttaaacaacagcctatgagggagtagtggactcctagct 320
Query: 121 tccaattcttggaaacttactagctgtgttcttggacaagtcacttcacttcgacttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaattcttggaaacttactagctgtgttcttggacaagtcacttcacttcgacttcct 380
Query: 181 cgtctgtaaaataatgacgctacctacctagatggctgctgtgaagtttaagtggattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtctgtaaaataatgacgctacctacctagatggctgctgtgaagtttaagtggattaa 440
Query: 241 caaggttttctggagagagccctgtacactacgcttgggtcatgacgatagcgtcctggc 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggcaatcaggagagagccctgtacactacgcttgggtcatgacgatagcgtcctggc 500
Query: 301 agatacaatgacgcgcccgtccccatcaggccagccgcacctgcagctctgctggaagcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatacaatgacgcgcccgtccccatcaggccagccgcacctgcagctctgctggaagcg 560
Query: 361 gggcagacggtcgagcaggcgcccgagggacgcctccacgtcgccgaagagccggtggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcagacggtcgagcaggcgcccgagggacgcctccacgtcgccgaagagccggtggat 620
Query: 421 gcgctcggtgcactcggccccgcgaatgaacgtcttgtagttggcgaaagccaggtcgcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgctcggtgcactcggccccgcgaatgaacgtcttgtagttggcgaaagccaggtcgcg 680
Query: 481 cgtctgctgcagccgctgggcccgctcttccgccaagcgctcgggttcgcgccgcagccg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtctgctgcagccgctgggcccgctcttccgccaagcgctcgggttcgcgccgcagccg 740
Query: 541 gtccagcccggagccgctcagctcccggaggt 572
||||||||||||||||||||||||||||||||
Sbjct: 741 gtccagcccggagccgctcagctcccggaggt 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
